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Mutant Lines
13-1288-1

13-1288-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 16631239 [Map]; Strand: c
- AT4G34900.1 - [+] show detail - xanthine dehydrogenase 2
  Distance: 0; Region: exon1 (CDS)
- AT4G34910.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: -294; Region: promoter

TTGAAAACGG NAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
ATCCATCAGG CAAAACTCTA CGAACACCAT TAACGTACAT TATTGCCTCC 
ATGAACTCGT TCTGCTCCAT CTTCACTGAA CCCAGACGAA TAACTGTTAT 
CCAATAATGG CAAATATCCA ATAATGGCAA AAATCCAATA ATTGCAAAAT 
CTTCTCTTTT TAAAATGTTT TTTTTTNGTT TNCATTTTTC NACAAAAAAT 
AAAAAANCCC AATTNTTAAC CCCNTAAAAA AAAANGTACC CCAAAATAAC 
CCCAATNTNG GAGTCNTNAA TCAGGTNTGG GACNTTGAAA AAACTCANTA 
NCAGNNTANC AAAGGAAACN CGGNGGAGGA GGTTTTACAA CTNTTTTCCC 
TTNACTTNTT NNTNTTNTTC CTGCCCCGNT TTTCAAACCT NTTCAACCAA 
ACAANCTCGG AANTTNCNTN TTCCATGGGT AAAACAAAGT TAAANCCTNT 
GGNGGATGNN AACTCGNAAG NGGGGGNCNA ANTTGAAAAA CCAAAGGANN 
TTGNGGANCA GANAACCGNC GGANANCAAG AANAAAACCN AAAGNAANAA 
AAGGCCCCTA AAANTTTCNA ANAGCTAGGG CTNGATTNTN GTCTAATTCG 
GNCCCTANNN TAAAAAGGGT TTNGAAAANC CANCCCTTTT TTCNNNANTA 
GGCCNTTCTT TACATTNTGG AAATGATAAN NGAAAGCCCC NCCCNTTTTT 
TTTNANTTCN GGGNTNCTTA TTNTANCCT

AT4G34900.1

Model type: Protein coding
Short Description: xanthine dehydrogenase 2
Computational Description: xanthine dehydrogenase 2 (XDH2); FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, allantoin biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: xanthine dehydrogenase 1 (TAIR:AT4G34890.1); Has 21587 Blast hits to 20745 proteins in 1345 species: Archae - 453; Bacteria - 12993; Metazoa - 1073; Fungi - 109; Plants - 266; Viruses - 0; Other Eukaryotes - 6693 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G34910.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 35246 Blast hits to 34671 proteins in 2939 species: Archae - 524; Bacteria - 16250; Metazoa - 5646; Fungi - 4238; Plants - 2336; Viruses - 4; Other Eukaryotes - 6248 (source: NCBI BLink).
Link: InterPro Scan - TAIR