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13-1359-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1559210 [Map]; Strand: c
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G05415.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1359-1 - 5-prime edge 
    CCTTTCGGAG TCTTTTACTC AAAAAGCTAG AGACAATGTC TCCAGCAATT 
    CGAGCAGAAG AAACTCCAAA AAACATCATT AAATGTCGGG GTTCTTCTGG 
    AATGTGAGCN GGTTTTAACA AATCAAATAA ACATTCCGTT GTTCGTGATT 
    GGATGAGAAA GGAGTCTTTA ACTTTTGGGG GTTTATTAGA AACGAGGGTG 
    GACGAAACTA GTGCTAGCAA GATCATTTCT AAGGTATTTC CTGGGTGGTC 
    TTCTATGACT AACTATGAAC ACCATCGTTT GGGACGAATT TGGGTTATTT 
    GGAAGAGTTC GGTTCGTGTC ACTCCGGTTT ATAAAAGTGG ACAAATGATT 
    ACTTGCTCTG TTTTGACTGA AGAGAATGCA GAGGAATTTT TGGTTTCTTT 
    TATCTATGCT TCAAACTATG TGGATGANAG GCGGGAACTT TGGGAAGACT 
    TGAGAAATCA TTACAATATG CCAATGTTCC GTACCAAAAG TTGGATGATT 
    CTTGGTGATT TTAATGAAAT TCTGGAGGGG GAGGAGCANN CAAATTTTGT 
    TACTTCACCT TTTATTCCNC AGGGNNTGCG AGACTTNCAA NAAGNCNNTN 
    NANACTGCTC TNTANCTGAN ATNANCTATC NTGGNCCGGN GTTTACTTGG 
    NCANNTNNNA NANAANAGGG GNTNNTNNNT NAAANNGGAC NGAGNTNTTN 
    TTATTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1559326 [Map]; Strand: c
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G05415.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1359-1 - 3-prime edge 
    CCGAAAGGAC TTTGTGTGAA CTCTTTGAGG AGCGAGGAAG ATTTACTCTC 
    ACCGCTCCTG CTTTCTCTTT ATCTGAAGTG GAATT

AT3G05410.2

Model type
Protein coding
Short Description
Photosystem II reaction center PsbP family protein
Computational Description
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05415.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR