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Mutant Lines
13-1413-1

13-1413-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 4010168 [Map]; Strand: w
  - AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
    Distance: 0; Region: exon1 (CDS)
  - AT1G11890.1 - [+] show detail - Synaptobrevin family protein
    Distance: -611; Region: promoter
Flanking Genome Sequence: 13-1413-1 - 5-prime edge
```
GTCCCAGACA ACACTGTTTT CAAGAAAATA CACATTGGCT ACCTAGAAAC 
AGAGAAGAAT CCTCTTTTTG ATACAAGCAA GGAGGATTCA GTGCAGCGGA 
TGTATCGTAC GGTTGGAGTA AGCCTCCGCC ACAAAATGGT TAAGAAGAGA 
ACGAGAAGTC GCGAGAAGAT AGCCGTATTT GATCAAAATG ATTTCTTTCC 
TTGATTTCGA GTTTGATTCC AAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 4010046 [Map]; Strand: w
- AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
  Distance: 0; Region: exon1 (CDS)
- AT1G11890.1 - [+] show detail - Synaptobrevin family protein
  Distance: -733; Region: promoter

TCTGGGACAG TGTGTATTTT CTCCGAATCA CCGAGTGTGG CTACGAGTAT 
GAGCAGACTT ACCCCTTCTT GCCTCTGCTT CCTTTCTTCA TCTCGCTTCT 
CTCTCGCACA GGTTTTGTAA TTTAGATATC TACCCATTTG ATTCCCTACT 
TTGGTTGTAT CATTTCGTTA GTAACTGATT CTTTTTGGAT TCAGTTTTTG 
CGCCTTTGGT TCCATTGATT GGTCTTTGAG CTGTGATGGT GTTGTCTGGT 
TCCACTGTTA GCAACTTGGC GTTCATATTT GCTGCTATCT ATCTATTTAG 
GTACTTCTTT GACATTCATC CAAAATCGAT TATTGTGTCT AGAAATAAGT 
CAAGTCAAGA GTCTTTTGAG CTCTACAAGC TAATGGTGTT TGCTATTCAC 
CGTGTCTTAC ACCAGTCGTT GCTAACAGGG TTTCAGTTAT TGTCTTGAAG 
GATACTGAAG CATCATTCAG AGCTTCGATT ATCTTCTGTT TCAATCCGGC 
GTCCATATTT TATTCGACAA TGTAATGTGT TTAAGCCAAT GATCTCCTGA 
AAGTAAATAT GTTGTTCAAT GTTATCAAAA TGGTAACTAA CTGAAGAACA 
AACTGTTTCT TTGTGACTTC CAGATATTCA NAAAGTTTGT ATGCTCTTTT 
CTCTATTGGA GGAGTGTATC ACTTGTTATC TGGTAGCANC AATGTAGGCG 
TTCTTTGGTT TGC

AT1G11880.1

Model type: Protein coding
Short Description: transferases, transferring hexosyl groups
Computational Description: transferases, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 490 Blast hits to 469 proteins in 237 species: Archae - 6; Bacteria - 111; Metazoa - 123; Fungi - 146; Plants - 40; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G11890.1

Model type: Protein coding
Short Description: Synaptobrevin family protein
Curator Summary: member of SEC22 Gene Family
Computational Description: SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Link: InterPro Scan - TAIR