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13-1425-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15046171 [Map]; Strand: c
      • AT5G37810.1 - [+] show detail - NOD26-like intrinsic protein 4;1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-1425-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CTATATACAA TGGTACCTGC TCAAAACATT 
    ATACAATTGT ATTCATTAAT CCAATATTTG AATTTATTAA CTATAACTTA 
    GTTTTCAATT GTTTTTTTTG GGGGCATTTT TAACATATGT TTTGTTTTTG 
    GTTTTTGATA AAAGAACTCA TAGTTTTTAC GACTGATGTC ATGCATCTAT 
    CAATTTTGTG CGATCATTAA ATTAAAGTAC AATCTTCACA GCCACACGCT 
    AATCAGCCTC ATAACTACAA TTTGCTATTT ACCCTTGCAA TATTTTTAGC 
    AAACGACGAG CTGATCTACA TATTGATATG CTAAATGATA TTTATATTTG 
    GATACCTATG AAAATGACTG CTTTAATATT GCATAANATG ATAAAATTGT 
    TCTTTTTGTA TTTTTTGAAA AACAATCTTC TTCTTGACGT TAAACTTGTA 
    AAGCCTTAGT ACAAATTAAC CTGTTAACAA NANATACTAA TGTGTAAATG 
    TTTTTTTTCC TAGCACATGG AGGTTTTGGN GTCATTACTT TCTCGGAGGC 
    TCANAACTAC ACTTGANAAT CATCGTTCTG CTTTTGTTGA TCCATGGTTC 
    ACAAGCCATC TACAAGCTAA ATTCAGAGCC TTCAACGCTG CNAAGGTGAA 
    ATCACGTGTT CGTNGGTCAN AGGACATGCA NCGCTTNATC AAAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15046175 [Map]; Strand: c
      • AT5G37810.1 - [+] show detail - NOD26-like intrinsic protein 4;1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-1425-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAG 
    GTGCACAATT TGCGGGATCG TTACTAGCGA GTTTGACATT GAGACTAATG 
    TTTAAAGTGA CACCCGAAGC T

AT5G37810.1

Model type
Protein coding
Short Description
NOD26-like intrinsic protein 4;1
Computational Description
NOD26-like intrinsic protein 4;1 (NIP4;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 4;2 (TAIR:AT5G37820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR