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13-1426-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28554039 [Map]; Strand: c
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 13-1426-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTCTCTGTGT CCGTGTAAAG AGCTTTTAGT 
    TTGAATAAAG TTTGTTTTAG GTGTATCTGC GTTGGGTTTA CTTGCCTTAC 
    TTTGGTCCCA ACGTTTGAGT CTTTTAGAGG CCCAGCACGC CTATATATCA 
    CAAATTGGGC CTAACGACTC ATGTTTTTTG GGGAAATATA GGAAACAGGT 
    TTAGCTAGGT GCTTACGCAA CCACTACTGA CCCACCCAAA AAAATTGCAT 
    TAACAAATCA CGAGAAAGAG AGAATATCAC GTGATGAAAT CATTATTGAT 
    TTTAAATAGC AAAAATGAAG ACGGATCATG GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28554047 [Map]; Strand: c
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 13-1426-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    TATCGGATTG TATGACCGTG ACTTAAAATG TACAAAAGAG CCACTGAAAC 
    CAGTAACTTA TGATAGTAAA CATTATATGA TCCTCTTTAT CAATCCAACA 
    TTCTCTTCCA AATTAGATTT ATAAATCATG AATATGTAAG CTCCTACTCG 
    AACAAGAGAA TATCTAGACA ATTTACTTGA CGGTGAGTTT CCCAACCATA 
    CCAGCACCCT GGTGCGGCGC ACAATAGAAA CCGTAAGAGC CTGGCTCTGT 
    CAAAGTAACC TCGTAAGTCT CCCCTGCACC ATTTAGAAGC GCTGTCTCAT 
    CCATCGAGAT CTTGCTTGCG TCCACACCAC TAGGGATCTC GTCTTCGTCG 
    AACACCACGT TATGTGGGAA CCCTGCGTTG TTCTTGAACA CGATCTTCTC 
    TCCTTTAGCC ACCGTGAATT

AT1G76100.1

Model type
Protein coding
Short Description
plastocyanin 1
Curator Summary
One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.
Computational Description
plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR