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13-1533-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26437605 [Map]; Strand: w
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-1533-1 - 5-prime edge 
    CTTCTAGCTG GCGCAGCCCA GTTTCCTCCC GTGTCATTAC GGCAACCTCA 
    ATGTTCTTTC CGCCACTCTC AACTACCTGC AATGCAAAGC CGATATCAAA 
    ACAGCTATGA TCTCAAAGGA CAAAAAATCC TGAAATAACA AAATATCAGC 
    TAGGACGGAG AGGGCACCAA CCTCAAGCAG AGCACGGATA GCGAGTTTAA 
    TAGTTTCTTG GCCAGAGGAT TCTTTGTAGT TCTTCTCGAG GAATT

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR