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13-1559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055495 [Map]; Strand: w
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-1559-1 - 5-prime edge 
    GTTTTCCGAA CGTGAAAGCA ATTACATTTC CATCAGAATG ATTATTTTTT 
    CTTTTGTTTT TCTTTTCTGA AAGAGGGTCA ACGTACGATG GTTTCGGTAA 
    ATCTTTGTTA ATTGGTTCTA TTTTGGGTAT AGATGGAAGC AANGCAAAAA 
    AAAAGAAATA GATATATTTC ATTCTGATGC TGTCACCAGC CGGGNNNAAC 
    AAACNGANTT GCNGCTTAAA AAATTCTTGG CCCCTGTTTT AAGTTATAAG 
    TCACATGAGT AAGTACATAN AGAGATGGTT CTGATGGCAT GTGTTTGTGT 
    GACAGGCANA AGGGCTTATA GAGGANAAAA GGAGGCTGGC TTGTTATGAG 
    TTTTTGGAGC AATTCTGCAA CTGNGTTGCA TCCAATGTCT CTCTATTACA 
    NAAATCCATG TAAAAACTAA CCCTAAACTT GTTTAATTTA CTTGCATGGA 
    TTCCATTCAT CTAAATAAAT ATTGGGTTTT GCTTGAGCAG CCGGTGCCCT 
    GATNAGTGCC GCGAGGCCAT CTCCTCCCTT GTATATGCAN CCGCTANAGT 
    CTCTGAAGTC CCTGAGCTAC NCGACCTCAN ATCTTTATTT GCTGAGANAT 
    ACGGAAACAC ACTTGATCAG TTTGNGAACC CTGANGTATT TATTCTTTGG 
    NGACTATATT TTTTTNTATG CTNTGCCNCT TGGGTCCCTG A

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR