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13-1583-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5597351 [Map]; Strand: w
      • AT4G08765.1 - [+] show detail - transposable element gene
        Distance: 1073; Region: intergenic
      • AT4G08770.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 764; Region: intergenic
    Flanking Genome Sequence: 13-1583-1 - 5-prime edge 
    TCTAACGACC TACGAGNGAC TGANGNAAAT AAANCATGAT ACTGCTGGTA 
    ATTATCTAAT ATATTAANGA TNTGTCTAAC CTACTACAGA AATNGCNTAT 
    NTTACACAGT GAGCAGACTC TNTAATTTGA CGAAGTAAAT CAACATGTTT 
    GGTTTGACTT GCACCCGGTT TGCTTTCTTC AACCCATTTT ATTATATCTT 
    ATCGGAGTTG GAATCGGGAC TTTTGGTGTC ATATGAAAGA CTGACTAGGT 
    CATCAACTTT AGTTGTCTTA TATTTATTGA TAAATATGAG TTTATGTGAA 
    CAATGCAAAA TGTTTTTAGG CACATAGTTT GTTTTTTCTT TGTAGCGGTA 
    TGTGTTCGAC ACATTCATTT TTATATTCTT GACTAACAAA ACCAATATAG 
    TATTTTACGA TTTGGATAAT CCAACTTGAT TAAAGACCTA CGCTTTATTC 
    TCTGTGTTTT TTTTTTTCNN GNTTTTTNGC CCANNATNAC TTNGNCCNCC 
    NTNNTTTNTN TTNNNTTGNG GGNNNAANNT GNGNGGNNAA AAACNCTTTN 
    NCTTTTTTNC CCACNNNNGG GGGNGANNTN TTACCCCGGG CCAANGGGGN 
    GTAAANCCNN NGGGGGNCCN NNNCTCTTCN NAAANNCNTN GGGGANGNNN 
    TNNNNNCTNG GTGGTGNTNA CCNTGAAAAA AANCCNTTTN TTGGGGNTTT 
    ACCCCCTTTT TCCAGGNNAA AGANGNAATA AAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5597272 [Map]; Strand: w
      • AT4G08765.1 - [+] show detail - transposable element gene
        Distance: 994; Region: intergenic
      • AT4G08770.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 843; Region: intergenic
    Flanking Genome Sequence: 13-1583-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAATTT 
    GTTACTACAA TATGTTCTGC AAAAGAAAAA GAAAACAACT CTTCAAATGT 
    TATTTTTTTT TGTAATTGTT TACTCTTAAC TAGTTTGTAA TAAATGTGGG 
    TCAAACCTAT GAATT

AT4G08765.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.2e-158 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR

AT4G08770.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: vacuole; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G08780.1); Has 4348 Blast hits to 4314 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 40; Plants - 4262; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR