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13-1628-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8053833 [Map]; Strand: c
      • AT1G22750.4 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1...
        Distance: 929; Region: intergenic
      • AT1G22760.1 - [+] show detail - poly(A) binding protein 3
        Distance: -1492; Region: intergenic
    Flanking Genome Sequence: 13-1628-1 - 5-prime edge 
    CCAATTATAC TATAGTATCC TCAACTATGC CGGTCAACAC TGGTCTTCAA 
    CGGAGTAAAT TTATTAGTGT ACCGGAATTG CATGTCTGTG GTGTTAACTA 
    CATGACGTCG TATAGTTCAG ATATGTGGTC ATACAATACA TCTACTTCGT 
    ATAGCTAGGG ATACACTAAT ATGCTTGACA TGTGTGATCA TGCATTCTCC 
    GATATTTTGT GTAGCTAGTT ATTTTTCTTC TACTATAAAT AGAGATATTA 
    AACTATTTTG GATTCTTTGA CCGGATCACA TGGATTACAA TAAACCATTT 
    TGAAATCTTT AAATAGTTGA CTAAAAGAAA ATTTACTATA GGGATATTGT 
    TAAGATGTTC TCTATTTTCA ATTGTATATA AGTTGTGAAA TGTAATCTTT 
    TTAATTAAAA TATAAAAATG ATGATGATTG GTATGTTGAA TGATGGAGTA 
    ACAAAATATT ACAGTAGTGT GTAAAACACA TCCGTTTATT TATGAAGATT 
    ATAATTGTGG CATTGATACG GTTCATCAAG CT

AT1G22750.4

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 186 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22760.1

Model type
Protein coding
Short Description
poly(A) binding protein 3
Curator Summary
Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.
Computational Description
poly(A) binding protein 3 (PAB3); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2); Has 52215 Blast hits to 23458 proteins in 902 species: Archae - 22; Bacteria - 3112; Metazoa - 26727; Fungi - 6853; Plants - 9433; Viruses - 0; Other Eukaryotes - 6068 (source: NCBI BLink).
Link
InterPro Scan - TAIR