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13-1717-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10576231 [Map]; Strand: c
      • AT1G30100.1 - [+] show detail - nine-cis-epoxycarotenoid dioxygenase 5
        Distance: 2866; Region: intergenic
      • AT1G30110.2 - [+] show detail - nudix hydrolase homolog 25
        Distance: -5504; Region: intergenic
    Flanking Genome Sequence: 13-1717-1 - 3-prime edge 
    GGTGCAGCGT GACCCTCCTA TTAATACTCT GCCTCCGCCC CTGTTGCTCT 
    AGCACTTAAT TTCGACAAAA GACACAACAT GCTTGTCTTC GGATAGTTGC 
    TGGCATCTAG CCACCCAACC AACATAAAGT TCACAACTAG CCATATGTGA 
    TAATGAGGAC TCTGCTGGAA GATTGTCTAA GGTTCCATCG ATCAAACCAA 
    GTTTTTCGCT TGGTTCGAAT ATTATTCATG GTTAACTTAG CCCACTGTTT 
    GTAATTTTTC TCATTCGACA ATGTAGATTT AAGAATAGGG TATAAAGATG 
    AAGCT

AT1G30100.1

Model type
Protein coding
Short Description
nine-cis-epoxycarotenoid dioxygenase 5
Curator Summary
Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
Computational Description
nine-cis-epoxycarotenoid dioxygenase 5 (NCED5); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 2 (TAIR:AT4G18350.1); Has 2882 Blast hits to 2845 proteins in 494 species: Archae - 16; Bacteria - 802; Metazoa - 232; Fungi - 202; Plants - 893; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G30110.2

Model type
Protein coding
Short Description
nudix hydrolase homolog 25
Computational Description
nudix hydrolase homolog 25 (NUDX25); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 26 (TAIR:AT3G10620.1).
Link
InterPro Scan - TAIR