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13-1721-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Fruits (Siliques)::short)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26007807 [Map]; Strand: c
      • AT1G69180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 13-1721-1 - 5-prime edge 
    CCTACTTNCA TTACTTCCGG AGGCCACAAC ATGATCCATG TAAGCTATAC 
    AAACTAAGTC TGCATAAGGA CATATTTATA TACATTATAT AAAGATTTAA 
    AATGTTTTGT TCAATTAGGG CCTTGGGATT CGGTGAGAAG AAGTGAACAA 
    AACTCAGGGG AAAAGAAGCC TAAAAATAAC AAACGCATGC ACGTGTGCGA 
    GTGGCTGCGT CGTTTTTCTC ATCTTGTGTT GTTCTTCTGT GTAATTTTCT 
    TATGTATGTC ATGTTGCAGA AAATGATGTT GCCTTAGTTT TTATGACTTT 
    ATATTTCTGT CTGTCTTTAG ATTTGAAAGT AACGTCACTT GCTATGTCCC 
    TTTGGACGTT TATGTCTGGT CTTTATTTGT CTTAATCCTA TCAAAATTTT 
    ATATGTGTAT TCCTTAATTC CATCTGGGAC ACTTTTTCTT TTCCCCAATG 
    ATTTGCAACT TTCAACATCG TAACTTCGAA CTCGAGAATC TCAGATCAGT 
    CCTNAGATGA CGTGAGTGTA CAGAACAAAA CAAAACAAAA GTAAAAATTC 
    ACTTTTTCAG CGAATATTCA TTACATGTAT ATATACAAAT TGGTCTGTAA 
    CGCTGTGAAA AGGAAGTAGG CATANATATC TGAAGCAATT TTTCTTCAAA 
    ACATTNTTGA CTGGGTGAAT AATAACNCCA ACAGGNTACA NATTACAATA 
    ATNCGGGGTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26007922 [Map]; Strand: c
      • AT1G69180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 13-1721-1 - 3-prime edge 
    TCAAGTAGGA GAGTTGGGTA TGTACTTAGC CCACTGTTTG TGACATTTTT 
    CATTTACACA AACGAAATTG TGAAAAAATA ATATTAAAGG TGACAACAAT 
    GGTTGGTAAC AAAAAGAGAC TTGTCTTACA TTTTTGGCAG CAGCACTGAA 
    AGCT

AT1G69180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region.
Computational Description
CRABS CLAW (CRC); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 451 Blast hits to 449 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 437; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR