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Mutant Lines
13-1727-1

13-1727-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 1559546 [Map]; Strand: c
  - AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
    Distance: 0; Region: intron2 (CDS)
  - AT3G05415.1 - [+] show detail - transposable element gene
    Distance: 0; Region: exon1 (NonCoding)
Flanking Genome Sequence: 13-1727-1 - 5-prime edge
```
ACCAGAAACT CAGTCGGAAG GAGATGGTTG GTCCATAGTC TCCCCAGGTA 
AAGGAAGCAA AAGTACAGAA AAGTCAAATG GGAAACCATT AACTTTTGGC 
CAAGTAACAA TTTTATCCTC TTCTCGGTAC TCTGTCCCGA GTGATCAGGA 
GGAGAATGGT GATAAAGATG AGTTCCCCAC AATCTCCTCA GAGGAAGTCA 
TTGAGACGGA GCGAACGAAC TCTATTGATG ACGTTGTCTC TACTCAAGCG 
ATCGAAAAGA ATT
```
3 prime edge [+] show sequence
1. Chromosome: 3; Position: 1559662 [Map]; Strand: c
  - AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
    Distance: 0; Region: intron2 (CDS)
  - AT3G05415.1 - [+] show detail - transposable element gene
    Distance: 0; Region: exon1 (NonCoding)
Flanking Genome Sequence: 13-1727-1 - 3-prime edge
```
TTTCTGGTGG TACCACCTTC TCTGCTACCA CTTGTTGTTC AAAAACCTCC 
TGAGAAATCA AAATCGAGTT CTGAATCCCA TCCTCTTTAT TCCCACTATT 
AGCTGACTCA TGGTCAGCAA CCTCTCACTG TGGTAGCAGA AGCAGAAGGA 
TC
```

AT3G05410.2

Model type: Protein coding
Short Description: Photosystem II reaction center PsbP family protein
Computational Description: Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR