1. Home
  2. Mutant Lines
  3. 13-1780-1

13-1780-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18835580 [Map]; Strand: w
      • AT5G46450.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -38; Region: promoter
    Flanking Genome Sequence: 13-1780-1 - 5-prime edge 
    TGTGGAATTG CTAGTCACCA CTTTGCCTCT GCTAAATTAT ATATGGGCAA 
    ATCACCTTCT CCTCTGATAT TTTTTTCCAG AAACAGTCTA AGATTGTTTC 
    CTCCTCTGTT AATGGCTTCT TCGTCCTCCT CTTCTCGCAA TTGGNCATAT 
    GATGTTTTCC CAAGCTACCA ACCCGGGCCG GGGACCACNC CNTGCCCTTT 
    AGNGANNNNN NNNNGGGGGG GGGTGNGATN AAANAAAAAG GGNGGGGGCG 
    CNNNACCCNC CNNCNNNTAN NAAGNNANAA TNAANNANAT NGTNNNNGNG 
    GCCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18835464 [Map]; Strand: w
      • AT5G46450.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -154; Region: promoter
    Flanking Genome Sequence: 13-1780-1 - 3-prime edge 
    ATTCCACAAG TGGTTCTCAG ACTTTTCTGC CAACTTGACA GAAGGCTCCT 
    CCTTTGGAAT GGATCGTGAC TTTACCACCA CCACACAACT CACAATCACA 
    TTTATAGTCT CTTACCCTCT TATCCTCACA TCACAAGTCA AACCTTTGCA 
    ACTTTCTCAA GTACTCCTCT ACCAATAACC ACAAGAAAAA ATCCCATTCT 
    TAAAATGATG AAACCAAGTC GAATCTCTTA AAACAATCTC ACGTCCCAGT 
    TCCCACAACT CTTAANATCA GACTTAATCA CTGTGTGACA ATCTTCAAAA 
    AACCATAGTG ACTTTACTTC CTTCAACTAT ACTAACCAAC CCAAATGCAA 
    CAGCAAGCCT GTCACTACGA TNTCACAACA TCTATTTTTC TTCCCAAGAT 
    ATATACCTTA CAAGTGTAGT GTTTAATCTT TCTAGATATG ATTTGGTCCG 
    CTTGACAAGT AACCAAAAAG CT

AT5G46450.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR