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13-1815-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6676031 [Map]; Strand: c
      • AT1G19300.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -3378; Region: intergenic
      • AT1G19310.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 203; Region: intergenic
    Flanking Genome Sequence: 13-1815-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACNGACCG TTACCGACCG TTTTCATCCC 
    NTTNNAAGAN CTACCTCCAN CNNNTNATCG AACNCACTAT TCAACACATT 
    TTNNCTGGCN ATGATACANT ATCNGCTNCA NTANGANGNT CCNANAACTG 
    TGNTNGCTGA TANACNCAGA NTTTAATGAT CCGNANGGAN CCANCAACAT 
    GATGATGANT NNTAATCANT ATCCAACATT ATGGGAATAN TTANACAACA 
    TAAGTATATA TTGANTGAAN ACTCNCANGT CAAANNCTTA NCAAACATCA 
    GTNAGANAAT CCGACAGGNT TTATTAATAT ATGAACAATT TGCTAAAGNA 
    GCAGTTTACA AGCCAACTCA NANCACATAT TNTCCCATGT TTTTATGCNA 
    TANANTCTAN ANTANNAAGC GAANTACAGT NANCTAAATC GATTTCCTCA 
    CTANCTCATG AAGAGAGANA ACACAGCAAC GACGAAAACA ATGANTAACA 
    ATATCCTCAA GTGATGGTCT TGTTGTCCTT GTNGA

AT1G19300.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.
Computational Description
PARVUS (PARVUS); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1); Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2; Bacteria - 918; Metazoa - 149; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19310.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
Link
InterPro Scan - TAIR