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13-1919-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4874459 [Map]; Strand: c
      • AT3G14517.1 - [+] show detail - transposable element gene
        Distance: -2320; Region: intergenic
      • AT3G14520.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 1289; Region: intergenic
    Flanking Genome Sequence: 13-1919-1 - 3-prime edge 
    GTTAATATAC AAACACGATG TCGAGAACAC CATGACGCCA TCAAAATTCA 
    AATTCGAATT GAGTTAATGA TTTTGGGATG ATTTTGTTTT CTGAAATGTA 
    TTGAAATCAT GCCTTATTGG ATATAGTATT TGTTGAAGTT ATTAGACTAT 
    TATTAATGGA TCGATCATAT ATAAAAATGT TATGATCAAA TGTCCTGAAA 
    TTTATACTAA TCACATACTA AGATTTCTAA TAGTAATTCT GCAAAATTAT 
    CTCAAATCAT TTTAAATCCG TCTAAATCTC CACAGATATT TTAAATATTC 
    ATATAACCAA AATCACAAAG CCGGTATAGT CTTTTTTTTT TAANGNAANG 
    NTAAATTATN TTCAAANGAA AAATNTCNTT NTTACAACAA GNGCAGCTTT 
    GGATTGAAAA CAGCTGAAAA TNTNCAAATC AANANAGGTT AATNGNNGGA 
    TTCAAACCAC AGTTGTAGTC CCTTATNATN TCGTCNATCG CCCATCTGTC 
    TTTAGNGANG ATTNGGANAC ATACTTNGAT NTCTGCAGCT TTACATNTNT 
    AATACATNTA ATCCAGGGAT GCTTTGGGAT CACGTTTGTA TTACTCCAAA 
    AAAGGGGAAG CTTTGGGATT ATCTGCTTTG CCCTAAAAGN GGATN

AT3G14517.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G14520.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14540.1); Has 1704 Blast hits to 1673 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1700; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR