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13-1921-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1356856 [Map]; Strand: w
      • AT2G04070.1 - [+] show detail - MATE efflux family protein
        Distance: -1066; Region: intergenic
      • AT2G04080.1 - [+] show detail - MATE efflux family protein
        Distance: 333; Region: intergenic
    Flanking Genome Sequence: 13-1921-1 - 5-prime edge 
    GGTTATAGAC TATAAGTATT TTTCATCTAT ATATTTTTAA TGATTTACGT 
    CAAGAAACAT GTATGTGAAA ACTCTTATGG ATCATTAGTG TAAAGTTATT 
    ATGTTTGGAC CATATATAAG AGAGATTATT TTCTTTTGTG AATTTTAAAG 
    TTAATACTAA GTGTTAAATC TGGTTGTGCC ATACAGGCCA TTTTTAGTGG 
    ACTTATTGGG ATAATGGATA GGACTCACAT AGTTGTTTTT TATAAAGATA 
    GGACTGATTG CAGCTGAGGC CATTTTTAAT CCCATGGTGT TTGGAACTAA 
    TGAGTTTTTA TTTACTTGTT ACATTTGTAT TTTAAAGTTT GAAGAAAATA 
    AATAAATCAT CTTTCAGCAT GTGCAATTCG AATAATTTTT CTAACTAACG 
    AAAATATCAA CTCAAGAAAA AATGTATAAA TCCTGGATAA AAGTTTTACA 
    AAAAAATATT ATAACCCATC AAAATAACAT TACATGTTTT TTTGCACATG 
    ACTTGCAAAT ACTTTGAGAT AGCTCTCAGG AACAACCTTC ATTTAATCCA 
    ATCCATTTTC AGTTGAGATT ATTCTCTTCC TTGCCTTCTC AGCCTGCAAA 
    TAATANAGTC TAGTTACTTC ANAGCATTCA AAAACTANAA TGGAACAAAC 
    TCTAACCTGT TCCTTCCANT TCATGGNGGC TGNGACNATA NCCNNNNAAG 
    NGGCTTGCCC CGGGGATNAC CANCCNGGGC CGNNNACCNC CNNNCCCNTT 
    N

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1356801 [Map]; Strand: w
      • AT2G04070.1 - [+] show detail - MATE efflux family protein
        Distance: -1011; Region: intergenic
      • AT2G04080.1 - [+] show detail - MATE efflux family protein
        Distance: 388; Region: intergenic
    Flanking Genome Sequence: 13-1921-1 - 3-prime edge 
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATT 
    TTCGTTATAG AAGATTCAAA TTCCACATAG TCCACTAATG TTATGTCATT 
    TAATTAGTAG GTTTAGTGGT GAAAACTTAA TACGAATT

AT2G04070.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: transport, drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04080.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04070.1); Has 9518 Blast hits to 9397 proteins in 1914 species: Archae - 186; Bacteria - 6503; Metazoa - 146; Fungi - 326; Plants - 1327; Viruses - 0; Other Eukaryotes - 1030 (source: NCBI BLink).
Link
InterPro Scan - TAIR