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13-1926-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2602182 [Map]; Strand: c
      • AT3G08560.1 - [+] show detail - vacuolar H+-ATPase subunit E isoform 2
        Distance: 275; Region: intergenic
      • AT3G08570.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 76; Region: intergenic
    Flanking Genome Sequence: 13-1926-1 - 5-prime edge 
    CTTANAACAT GTAAATATCA TATGCATTCT CAACAAAANG GGGNGGTTCT 
    NGAGTATTCT ATATCTTATG AAAAATCTTG CANGTNTTGC ATTGCGATTA 
    CTTCAAAAAT NTTTTANAGG AAATNGAGTT AAAANGGGCA TANCTCAATA 
    NCTTCTCTGC AGTTTTTATG TATCATTTTT TTCANCAATT ATTCTCTNTN 
    GACAATNTNG NAAATNGAAA NGGATGCNAC AAACAAAAAA CAGTNGATCT 
    CTNCTAAAAA AGNANCAANC CTTGANAGNG NNACANGGCC AAAANGNGTC 
    NCTTNTNGAC CCCTNGGCAA AATNTTTNAA NCTNGGGGGG CNGGNATCAT 
    CCTCTGGNGG TTTNAGGANC NCCAACNAGG CCCGNCCGGA TNTGCAAANA 
    TNAAAAAAAA ATTTATTGGG ANANATNGGG ANTGAAAAAA AAAAAAAAAC 
    TTNCNTATTC AAAAAAACCA ANCCTGGGGA NGTTNCNANC CCGGNCCGGN 
    NACNACCCNT NCCCNTNTA

AT3G08560.1

Model type
Protein coding
Short Description
vacuolar H+-ATPase subunit E isoform 2
Computational Description
vacuolar H+-ATPase subunit E isoform 2 (VHA-E2); FUNCTIONS IN: hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, vegetative cell; EXPRESSED DURING: pollen developmental stages, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit E1 (TAIR:AT4G11150.1); Has 759 Blast hits to 757 proteins in 292 species: Archae - 68; Bacteria - 19; Metazoa - 249; Fungi - 151; Plants - 127; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G08570.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08660.1); Has 979 Blast hits to 951 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 880; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR