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13-1938-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18202883 [Map]; Strand: c
      • AT3G49110.1 - [+] show detail - peroxidase CA
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-1938-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    GTTCTATGTG AGAATAGTTG ACTCAATATC TGGCGACCAG ACTATATGTT 
    AAGATAAATA AGCGGGATCT CAAGTTGTTA CTTGAGCAGG AGCAGATTGT 
    ATTGGTGTTT ATAGTATCTA AGTAGTTCTC TGTTTTTTTT TATATTGGCC 
    TTTGATAGCC GTTTTGTTAA TCGGTCTAAG CT

AT3G49110.1

Model type
Protein coding
Short Description
peroxidase CA
Curator Summary
Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
Computational Description
peroxidase CA (PRXCA); FUNCTIONS IN: peroxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to light stimulus, defense response to bacterium, defense response to fungus, unidimensional cell growth; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4322 Blast hits to 4294 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 31; Plants - 4239; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR