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13-1949-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5903037 [Map]; Strand: c
      • AT1G17255.1 - [+] show detail - other RNA
        Distance: 0; Region: exon5 (NonCoding)
      • AT1G17250.1 - [+] show detail - receptor like protein 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1949-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TGATCTCCCA TCTGGCTTTC TCTCAGCCCT 
    TGATCAGCTC AAAGTTCTTG ATCTTAGTTA CAACAGCCTC GATGGTGAGT 
    TGCCAGTTGA ACAAACATTT AGAAATGGAA GCAACAGATG TTTCCCAATT 
    CGGATAGTTG ATCTGTCAAG CAATTTTCTC CAAGGCGAAA TCCTCCCTAG 
    TTCTATTTTT ATGCAAGGAA CTTTCGATTT AATCAGTTTC AATGTCAGCA 
    AGAACAGCTT CACAGGCTCA ATCCCTTCGT TTATGTGCAA GAGTTCACCG 
    CAGCTCAGCA AACTGGATTT CTCCTACAAT GATTTTACCG GTAATATTCC 
    GCAAGGACTA GGGAGATGTT TGAAGCTAAG TGTTCTACAA GCAGGCTTCA 
    ACAATATCTC TGGTGAAATC CCAAGTGACA TATACAATCT TTCGGAGCTC 
    GAGCAACTCT TTCTACCCGT CAATCATCTT TCTGGAAAGA TCAATGATGA 
    CATCACCCAC CTCACAAAAC TAAAATCGCT CGAGCTGTAC TCCAATCACC 
    TTGGAGGAGA AATACCAATG GACATAGGTC AGCTCTCTCG CCTGCAAAGC 
    CTCCAACTNC ATATCAATAA CATCACTGGT ACAGNCCCCC CTTCTCTTGC 
    AAATTGNACT AATCTCGTCA AGTTGAATCT GANGCTTAAT CGGCTGGAAN 
    GAACCTTATC AAAGCTTGAC TTTTCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5903053 [Map]; Strand: c
      • AT1G17255.1 - [+] show detail - other RNA
        Distance: 0; Region: exon5 (NonCoding)
      • AT1G17250.1 - [+] show detail - receptor like protein 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1949-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCANGG 
    NTATGANAAA GATTGAGTNG ANAGAGATGG TGGAGACNCN CAACAGACAN 
    AGGGAGTTTA CCNTATAGTG CTCTAAAGGG CAATGAGATT GCAGTGATGT 
    GGCTTATCCG GGGAATCATC GCANGTTATT CCTTCCCATG AGCAACAATC 
    AATGGATGGG TTCCAATTCA TTAGGAGANN CNGAAGAAGA ANCGTTTCCN 
    NAGAACCACA CTANGGATTC TCGATCTTGC NAGTTGCACA NAGCCTCTGA 
    NNCTGCNATN NAANGGACAC CTGATGAAAA GAACACACCT GAAGGAGTAT 
    GCCAATCATG TGAAAACTCA GAGCTTGTAT TGGTCTTGTG GTTGATGAAG 
    TTCTCACAAA ACCTTTGGCT TTGAATCTCC CCTCATTAGT CATGGTGAGA 
    ACAAGAACAA GACGAGAAAC AGACAAAGAA GATGAAAAAA CTTGTTGGCC 
    AGTGTTGACT AAGGGGGAAT AGCCCAGACA TAACAAAATT AGACTTGTCG 
    TACATCTTTA ATATTTTTTT ATCTGTTTCT TTGTCCTGAC GCTTTCATTA 
    TTCCTGTGAT CAATTTTCTC ATACCATTGG TCCATCGTTA AGCCTTTCTT 
    AATTTCATTT TCTACGTAAC ATGAGAGGAG ACCAAGTCCT ATGAGAACAG 
    TTGACGTAAC AGTGGTTGTT AAGTTAAGTT TAAAAAGAGG AAGCTAGTGA 
    GAGTGACCGT TAGGTAAANA AGTGAGATCT TTAN

AT1G17250.1

Model type
Protein coding
Short Description
receptor like protein 3
Computational Description
receptor like protein 3 (RLP3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1); Has 81484 Blast hits to 24794 proteins in 958 species: Archae - 37; Bacteria - 4331; Metazoa - 15807; Fungi - 760; Plants - 53957; Viruses - 2; Other Eukaryotes - 6590 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17255.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G17250
Link
InterPro Scan - TAIR