1. Home
  2. Mutant Lines
  3. 13-1970-1

13-1970-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3753308 [Map]; Strand: c
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: -528; Region: promoter
      • AT1G11200.1 - [+] show detail - Protein of unknown function (DUF300)
        Distance: -57; Region: promoter
    Flanking Genome Sequence: 13-1970-1 - 5-prime edge
    GTTATTGTAC GATTCATCAA TGGTATAGAT TTGTTTGATT AAAAGAATNG 
    NTTTTTTGAC CAGAATCTGT TCATCATNGA CCGGNTCAAA ATCAGCCGAG
    TCCTCTTTGC GACCAAGAAA TATACCCAAG TCCTCCGTCG TTATTTGCCG
    GCCGGNTTGG TTTTCCGGNT AAAAGTTCNA ACCGAATCNA ATNTAGGTTA
    TNCATTAAAA CNNCNATNGG NTNGGACTTA CAANTGCGGC TTGGTTANGA
    NAAATTTNGN CGANACANGC CNANANCANA NANNNNCANA ACCGNAAGAN
    NATANCAAAT TNNTGNTACA AGAATNAGNN GTTANTGTNT NGNNTNCGTN
    GNATGNTGGN TTCGCNTTNC TNNCTATTNT NGNNTTCNNC CACCATTTNT
    CCCANATCNN NNGCGANNCA NNNNGCTNAN TGCNACCANC ANANCNTACN
    NACNNCANCA ACANACNTAG AGNGTANAAC GTNGANNGAN AANGCNNGTT
    NNAATTNNNN GNCCNGNCAC ATANTNTATG CNNNCNANNG TATCNANACC
    CNNTNNNACN GGACNNCCCN NNCAATTANN NTNGANTGGT GNCNCNTNAN
    CGNCNGTCGC NATNNAGAGA GNNGCNNCNC NAGNNTNNNN NGNNAAAAAN
    CCNCNNGTNA CGCNNGCGCC GTNNNCGGAN TATATNATGN NANANCGNNC
    NCACCNNAAN NNNACTANAN AGCNANCAAT CNNAANAANN GATNTNGACN
    NCGGNCCCGT ATNCATGTTC TNTN
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3753424 [Map]; Strand: c
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: -644; Region: promoter
      • AT1G11200.1 - [+] show detail - Protein of unknown function (DUF300)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-1970-1 - 3-prime edge
    ACAATAACAA ACAACTCGGT GAAGTTCTCT ACCTGAATCG TCTTCTTCGA 
    TAATCTCCCT CTTGTTTCAA TCAAGGTTTG CCTTCTGATT CTCTCTACTT
    CTTCTTCTTG TTCATCTCTT AAGTTCAGTA TCACAAAAAG TTTCGATTTT
    GATGATCCTG AAGAGCTTGA AAGTAATGGG TTTTCGGCGT ATAGTTACTC
    CTTTTAGCCC CATTTTGCTG TGTCTTAGTT AAATTTGGAA TCTTTTAGCT
    CGTTCGTCAA TGATTTGATT CTGGGGTTTC TAGAGTATAA GATCTGTGAC
    TTAGACAAAG AAAGTATGTC AAAGTAGTGA GGTTACTATT TAAGTACTGG
    GAATTTCTGA ATTAGTATCT ATATCTCAGG AATCATGATG TTTTAGTTCT
    ATTCAGTCTA GAAACACTTC ATAATTGTGC TAGCTGCTAC ATCTGATTGG
    AATT

AT1G11190.1

Model type
Protein coding
Short Description
bifunctional nuclease i
Curator Summary
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational Description
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11200.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF300)
Computational Description
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G21570.1); Has 839 Blast hits to 837 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 195; Plants - 241; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR