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13-1976-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26422703 [Map]; Strand: w
      • AT5G66070.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon4 (CDS)
      • AT5G66070.2 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-1976-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCNGNNCG GTCTGTGACA GACACCTCTC CGGAGATTGT CTCTTGCTCT 
    GTCTGCCTTC AGGTTTGTCT CACTTCCCCC CTCTGCTTTT GAACATCATC 
    TTCCGCGGAA CGTAGATTAG AAGAAACCAT TATATATTGT TGCAAAAGGT 
    TGAGAGAGGT TCTAGATGTT TCTATTAGGT GACAAGTGGT TGAAAGACAA 
    AATTAATTAA AATTGAGGTG ACGAAACAGG ACTTTCAGGT GGGAGAGACA 
    GTTAGAAGTT TGCCGCACTG CCATCATATG TTCCACCTAC CATGCATCGA 
    CAAATGGCTT CGCAGGCATG CTTCTTGTCC CTTGTGCAGA AGACATCTTT 
    GAATTGATTT TGAACTCTTC TTTCTTCTCT TCTTTGTACA TGAGGTATAG 
    GCATACACAC ACACACATAT ATACACACTA GTAGTCTTCC TTGATTTTTT 
    TAGATTACAC GTTACACANA TTTTGATGCA CCAATCATTG TAACTTCACT 
    CATCTCTTGN AGATNCTGTT TATTTATGCT ACTTATTCTT GGCTTCATCA 
    TTCAAAAAGG ACATGCTGCA CTTTCCCAAT TATAAAAAGT TTGGNGATCG 
    GNTTTGCATA CACTAAATCC CAAATGAAAA AGCNTNTATC CATANNTATT 
    NCTTGTNGNC AAAAAACAAT GNTCTAGTTT TAANGACCTA ANNANGAGAN 
    ATNATACATT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26419434 [Map]; Strand: w
      • AT5G66055.1 - [+] show detail - ankyrin repeat protein
        Distance: -170; Region: promoter
      • AT5G66055.2 - [+] show detail - ankyrin repeat protein
        Distance: -170; Region: promoter
      • AT5G66060.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -47; Region: promoter
      • AT5G66060.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -47; Region: promoter
    Flanking Genome Sequence: 13-1976-1 - 3-prime edge 
    TTTAAAACGG NAGAGGTATT TTACNGACCG TCTCCGGACA GGTGTNTGNC 
    NCAGCAGCNA CAATGGAGNT TATTTTATTT TCTTTCTCGT GGTGGCTGGT 
    ANATTGACTA CTAATCAAAG GACGAACGGG AAGTCAGGCC CATATGTTTA 
    AGTAAGGCCC ATTAGAAAGT GAGGCCCATT GAAATTGTCG GATACTACAT 
    CAGAGGCCGG CGAGGAGGAG AGGAGAAAGC TCCGTTATTC AAGATTATTC 
    CGATAATGCA GTCACTCTCC ACCCCACACA CCATCTCTCT TCTTCTCCCC 
    AGAACCTCTC CGTCTCGTCT TTCTCCCTCT CTTCACTCCC TTGCTTTCCC 
    CACTCGATTA CGGTCTCTTT CCTATTCTTC TCAAACGTCG ATCCTCCCCG 
    ATGCCGGCGA TGATTTCATT GTCGGTGACT GTCTCGTCTA CGAGGACGGC 
    GTCTTCGAAG ATCCTTACCT GGAGAAGGAG GTCACTCAGG TTGCGAAGCA 
    GGAGCGCAAG AAGAATCGGC GTGGCGGGGC TAAGAGATTA GATGAATCCG 
    AGATTGAGCC CGAGAACCTC GTGCCGGAGG AATGGAGGGA TATTCANGCG 
    GAGGTGAATC TGACGAAGAA GGACAAGCGC AAAATAGCGC AGGAGATGGA 
    GTTCGGGGTT CGGGTGGAGA AAAGAGGCNA GGGCTATTTC CGCTGAGGAA 
    GTNGCATGAA TGACTTTCTC ACGTNCAAGG AAGCCAAGTT GGCTCNATTG 
    AAGCCTGTCC TTCTCGATAA ACCNGGGCAT TTNTNCGACA CAATGGAGCG 
    TNAAAGCCAT GGAAAAACCG NTG

AT5G66055.1

Model type
Protein coding
Short Description
ankyrin repeat protein
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
ankyrin repeat protein (AKRP); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 83523 Blast hits to 28077 proteins in 1268 species: Archae - 145; Bacteria - 7202; Metazoa - 43238; Fungi - 6726; Plants - 3393; Viruses - 1185; Other Eukaryotes - 21634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66055.2

Model type
Protein coding
Short Description
ankyrin repeat protein
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
ankyrin repeat protein (AKRP); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66060.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G20270.1); Has 2544 Blast hits to 2536 proteins in 339 species: Archae - 0; Bacteria - 388; Metazoa - 1050; Fungi - 75; Plants - 443; Viruses - 21; Other Eukaryotes - 567 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66060.2

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G20270.1).
Link
InterPro Scan - TAIR

AT5G66070.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66070.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 9487 Blast hits to 9461 proteins in 285 species: Archae - 0; Bacteria - 10; Metazoa - 2332; Fungi - 815; Plants - 5049; Viruses - 44; Other Eukaryotes - 1237 (source: NCBI BLink).
Link
InterPro Scan - TAIR