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13-1990-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14801695 [Map]; Strand: c
      • AT4G30210.2 - [+] show detail - P450 reductase 2
        Distance: 773; Region: intergenic
      • AT4G30220.1 - [+] show detail - small nuclear ribonucleoprotein F
        Distance: 1255; Region: intergenic
    Flanking Genome Sequence: 13-1990-1 - 3-prime edge 
    GTTGTGTGTN ACTTCTCTCG ACCTNNTAGN ATGANGTATN CGNNAACTAN 
    AAGTGAATAC GATTGCATAA ACGACAATAT ACCCCGTCTA GTTTAATAGG 
    AACCGATCGT CGACTTTAAA TTGACATGGT ACNTGCATGT TTTATCATTA 
    TTTTGTTGAT TTTATTCATC AAATCTAGTG ATGGTTTAAT CTGGTATATT 
    TTGTATTACN TTGTTCCATC TTCCAGGGAC AAACTTAGTA ATTTTCTTTT 
    AAAATTGATT CTTCAGTACC TTTAAATTGT AAAGCTACAT AGTATGTTGT 
    ACTTTTTATT TGTCAACATG GAAAATAACT AAAGATGATC GGTGTCAAAT 
    GTAAATAAAA ATCAAGTTGA CATGGTAGTG TAAATGATGT CACATGATTG 
    AATAATTGAT TTCTCAGTAT TTCACATGTT TTGTCAACGT CATAGCAGAA 
    CAAAATAAAT AAGGAATATT GACTTAAGGT CACTATATTA ACTTTTAACC 
    CGTATTTTTT TTATCAACAA ACCGTAAGTC NTACTGATTN TTTTTTATTA 
    AGGTTTGAAC TCAAACTATT TTTCTTATCT TTGGACTTTT CAAATAACTA 
    GACTCCAANT TTTCCCGNAA AACNNTTTTT TGTTAGTTTT TNNANTNGAT 
    GAGNTAAAGA CTANAAAGAN GNNTNTTTAA ATTGGTCATC TCNATTACCT 
    NTNANGNAGT CCCANTNTTG NCTCCCCCNT NGTGGGGCGN GATGNTAAGA 
    TNAN

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14801581 [Map]; Strand: c
      • AT4G30210.2 - [+] show detail - P450 reductase 2
        Distance: 659; Region: intergenic
      • AT4G30220.1 - [+] show detail - small nuclear ribonucleoprotein F
        Distance: 1369; Region: intergenic
    Flanking Genome Sequence: 13-1990-1 - 5-prime edge 
    CACACAACAC AAAAGTAGTT GAAAGAGGAA AGAAACATGT TGTTGTTGTT 
    GTTGGAAAGT TTTCTGTCCA CCTACTTATT TTGGCACGCT TCAATGTAAG 
    TCACGTGTGC TAAGTTAAAT CTAAACTATA TGCTCTCTCG CCTACCCACC 
    AAACCCATCG GTCCATTCCT CATTTTCAAT TTTCTTAGAA TAATATTCTC 
    AACCACCAAA AAACACTTCC GAATGAGCTA GAAGGTTGCG AATATGGCTT 
    TTTATTTCTC TCTACCATTA TTAATCATTT GACTCTTGCA TCCAACGCAC 
    ATCGACTTAT CTATCACCTT TTTGGTTCTT AATCAACTAG AGTGTTGGCA 
    AATTAATACT AGACTTGATA ACTTAAGTTG CGAGTTTATT TGTACTGGCT 
    TGTTTTGACA AACACAAAAA TTATGTTACT ATGACATGCG AAAGTAAGGA 
    TAACACAAAA TGTCGAGCTA ACACTCTCGT TCATTTTGAA CCGAGAGTGG 
    CCTACTTAGT TTTTAGTAAA AAGCATGGTC ATTTAACCCT AAATAATTCT 
    AAATTCATTA TCATTTGCAA ACTTACCTAG TTATGATATT ATGGCAAANA 
    AATTTCATAA TTTTTTCAAT TCTTTTTTGG NCAACAATTT GGTGGNCNTT 
    NATTGTTANT NNNGGNNNTT GNGGGCCAAA AATTTGGGGC TAAAA

AT4G30210.2

Model type
Protein coding
Short Description
P450 reductase 2
Curator Summary
Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.
Computational Description
P450 reductase 2 (ATR2); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADPH Cytochrome P450 Reductase (InterPro:IPR015702); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 6728 Blast hits to 6356 proteins in 1574 species: Archae - 5; Bacteria - 3354; Metazoa - 1038; Fungi - 894; Plants - 570; Viruses - 0; Other Eukaryotes - 867 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G30220.1

Model type
Protein coding
Short Description
small nuclear ribonucleoprotein F
Computational Description
small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1); Has 1186 Blast hits to 1186 proteins in 302 species: Archae - 341; Bacteria - 0; Metazoa - 298; Fungi - 260; Plants - 126; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link
InterPro Scan - TAIR