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13-2008-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26521583 [Map]; Strand: w
      • AT1G70370.1 - [+] show detail - polygalacturonase 2
        Distance: -6395; Region: intergenic
      • AT1G70380.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 4629; Region: intergenic
    Flanking Genome Sequence: 13-2008-1 - 5-prime edge 
    NGGATAAACN AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTATCCAATA TTGATTTCCT TTTCATACTA CATATAGAAA 
    GTGTATGAAA ATGAAGCATA CTCATTATTT ATTCATTAAT CAACGTCCTA 
    ATCAAATTAA CATGCAAGCC GCATAGCGTA GAGAGACCAT GTGTTGAATC 
    ATCCAACATG TGACGACTGT ATATATTATA GACCAAATAT GCATTATGTG 
    ACGTCAGTAT TTATTTTTGA AGTTTTAAAT GTAGTTATAT TTTTCTTTGC 
    AAAAGATTCC TGTAAGCAAT GACATAATCT TAATTTTGTA TAGTATTATT 
    TTTGATTATT GCATTTTCTT GCAGAGGCGA CGTATTTCAC AGAACTGTGA 
    ATCAGAACTG TGAGTTTCTT TTGTATAATT TAAACAAATA AAACTAAGGG 
    AAAAATTCAC GACATCTAGC GTATTATGTC CCGTTCACAT GTTCCATATT 
    TTGGGAATTT CCATCCTAAT TTTACAAAAA GGCACCGTTG ATGAATGATG 
    TAGCAGTGAT ATTTTATTTA CGTAATCATA TTACACATGT GATTTCTTCT 
    CTTTTAGAAA TCTTTAGTGA TGAAAGTATA TGAGATATTT GGGNGACTTT 
    TGGATCTGCT GATTCAATNT AATACTGAAT ACCANCCCGG GGCCGGCGAC 
    CACNCGGNCC CCTNTAG

AT1G70370.1

Model type
Protein coding
Short Description
polygalacturonase 2
Computational Description
polygalacturonase 2 (PG2); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein (TAIR:AT1G23760.1); Has 2933 Blast hits to 2085 proteins in 370 species: Archae - 9; Bacteria - 765; Metazoa - 357; Fungi - 320; Plants - 613; Viruses - 5; Other Eukaryotes - 864 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70380.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G70960.1); Has 1387 Blast hits to 1338 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1387; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR