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13-2052-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 252215 [Map]; Strand: c
      • AT3G01680.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR02164...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2052-1 - 5-prime edge 
    ACGGAGGCGT TGGTGTCTTC AGAGTCAAGA GTGGCACGAT CGAGAATATC 
    TTCAACGAGA GAGAGAAGGC CACGCACTTG GACTTCGCGA GCATCTGGGG 
    AGTGAGTTTG TTGAATCAGC TTCAGCATCA TGCNTTTCGT CCGATGACAT 
    CGCAAGTCCC GTCGCCGGTA TCATCTCCAT GGACGGAGTT TTACCGGTCG 
    TATTCTTGTG ACCCGCCAGT TGCTGAGCGT GCTGGGACTT GATCAGCGAC 
    TCCATTCTTG GTTCAGTTTG CTTTTGTTAG AAGAAGAGGC TGTCTTTATT 
    GGTTTGTAGT TTTGCTATGT GAGGTTAGCC TTAAATACTC GTTTCTCCCC 
    CTTAGTTACG GTTGGAAATT GAGAATCGAC TTCTTTGCTT CTGCAACAAT 
    TAAATTAAAC ATACAAAGAA TATCAATTAT ATAATCTTGT TTCTTTTTTG 
    CTTTTCTTTT TTTGGTGGCT TATTATAGAA GTTTTAATGA GATATATAGT 
    TCCCGTCCAC GTGAATATCG TTAGCACAAT AAAGTATAGG CCTACTTTAC 
    ACGAATATAT ATAGTAAATA AGAACTAAAT CATAATGGGA AGAAAATGGT 
    TCACTGAAAT GTTGCGAGTT TTACTCGTGA ATCTTTAAAG CTAGTACTCT 
    TTCTTTATGT GTGNATTACT GAATTACCAN CCCGGGCCGG NGANCACNCT 
    GNNCCNTNNA AAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 252331 [Map]; Strand: c
      • AT3G01680.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR02164...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-2052-1 - 3-prime edge 
    GCCTCCGTTA GTATTCCTAC ACACAATCAA TTTCGTTCTT AGTACGTACG 
    TATGATCATG TTCCTTTACG TACTTGCTTT GATTTTTCAG ATGCTTCCGT 
    TGCCCACTGA GGATAAACTG ATGCAGTCAA GCATGATGAG CNGTTCTTGA 
    TAGTGTCTCC TATGCTATCG ATCGTGTTGC CTGCGAGGTA TAGCTACATT 
    CACTTTTTGT TTGCCACAAT TCAAGTGATT CTTTGTTTAG ACTTTTTTGG 
    CTCACCAAAA TAACATCCAA GTTATTAGGT TTCGTTCGGG CTAAATTCGG 
    TGTGTTTTGG TTCAGTTTCA GGATATTCAG TCTAAATATA AATATGTTGA 
    CCATCTTGGT TCGGTTAGGT TGCGCAGTTT CCACCTACCC CTAGATATCA 
    ATCTTTGTGG TTATAGATGC TCTTATAAAC CACACTCTCT AAAGATTGTT 
    GTACACGTAA CCAGCAATAA CTTGTTACAN AAGCAATACA CTGTTTACGT 
    GGGTCTCTCT CTGTTCTTCT TTTCAGATAG CCTATAAGTC TCTGACGGGA 
    TCTGATTCAC ACGAAATCAC AATGTCCGTG TTCGAACACC TCTCGAGCTT 
    CCAGTGGGAC GGCAAGCTCG TGCTGACTNT ANCAGCGTTC GCGTTGAACT 
    ATGGGANAGT TTTGGCTTCT NGGTCCAATC TACTCAAAAA CCAGCTTGCT 
    AAGTCCCTTA CCTTGCTCAA GCTCGNCCCT GTGCAAAAAA AAGNGACCT

AT3G01680.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR