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13-2081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1854380 [Map]; Strand: w
      • AT3G06130.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT3G06130.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-2081-1 - 5-prime edge 
    CTNCCAGAGA CGGTCACTTT CCCTTGCTCT GAGTCNCTCT TGGTCGTGAA 
    AACACCTGAG TTTTTGGTTT GGTTTCTGAC NAATCACNTA AATGAGTTTC 
    AAGACTTTTA GTCNGCANAC TGAAAAAAAC TTTGATTCGA GACTTTAAAA 
    AGTCAAAACA GATTTTTGTC TCCTCTACCT TCGATTTTCT GCGGATTTTC 
    TTGACTTTCT GCTTACGGCC ATCACAGTGT ATGTTCACTT TNTGAACNCA 
    AGTCTCCTNN TTGGGCTGTT CTCAGATTGG GTCNNCTGAT AACTTTCATT 
    TTCGCCTTGA TTNCGGAGAA GGAATGGTGA AGAAACCTGG ATCTTNATGA 
    GCTCTTNTTT ACTCATTTTT CCTCACCTCA AAATCTCTTT CTCTCGCTTT 
    AGAACCTGAT CTGAGACTGC TCCTCTGTTN CTTGCANCTN CAATCTGGAC 
    CACCTAGTAA CCCCCGCGTT GNGTCTGTTT ATCACATNCC GAAGACGCCG 
    GGATGAGAAC CCCCNCNTTN CTTNGACNTG TTTCGCTGGN GCCTGAGGGA 
    GGATNCCTNT NTTTCGTTNC GGCCCCNCCG NNCNCCNNGG NGGANNATGG 
    AGACTGNCGG ANGGANAGCN CTTNCNGANG CTCGCGNACN AGCGACGATN 
    CCTACTTTGC CGTATTNGGT TGGTGGGCGT GCCCNTGNCC CNNCGTNTTT 
    TNTNCGAGNN GNGGGACGAC ANAAACAAAA AAAAAAAAAA AAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1854264 [Map]; Strand: w
      • AT3G06130.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G06130.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-2081-1 - 3-prime edge 
    TCTGGGAGCG TAGATCCTTC AGTTCTCATC AAGAAGCTCG CCAAATCTGG 
    TAAACATGCT GAAATCTGGG GAGCTCCAAA GGGTAACAAC AATCCCAATC 
    AGTCCCAAAT GGCCAATCAG TTTAAGGGAA TGCAGATTGA CCATGGAAAA 
    GCCGGAGGCG GTGGTGGCGG AAACAATAAT AACAACAAGA AAGGCCAGAA 
    AAACGGCGGA GGAGGTGGCC GGCGGTGGAG GTGGAGGTAA CAGTAATGCG 
    CCAAAGATGG GCCAGCAACT GAATCCACAA CATTTGCAGC AGCTTCAACA 
    GCTTCAGAAG ATGAAAGGGT TTCAAGATCT GAAGCT

AT3G06130.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1); Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188; Bacteria - 33817; Metazoa - 49902; Fungi - 6812; Plants - 10774; Viruses - 1540; Other Eukaryotes - 19044 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06130.2

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.3).
Link
InterPro Scan - TAIR