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13-2103-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9812179 [Map]; Strand: w
      • AT1G28110.1 - [+] show detail - serine carboxypeptidase-like 45
        Distance: -5283; Region: intergenic
      • AT1G28120.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubi...
        Distance: 780; Region: intergenic
    Flanking Genome Sequence: 13-2103-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATGC 
    ATAAACATAA ACCTAGAACC AATTATTTTG TGTCACCAAT CCGTTGTAAT 
    GCTAATGAGA AGTGAATAAG CAGCAAAAGT GTCACATTTT TATCTTAAAA 
    ACCAACAGAT CAAACACAAA TTTGAACATA AACCAAAGCC CAGAAACTCT 
    ATACGAAACC AAGAGAGAGG AGAGAAAGAA AAAAGGAAAA AAACTTGTTT 
    TGTTTTATTG GTCCTCCAGT GATATAGTGT CACGTCAGCG AACCTTACTC 
    ACCCAAAAAT ACCTTATTCA AGGTTCGCAC CTTGGTTAAT TAGACAATTT 
    TGATTTAATT TTTTGCTTCT TTTCATTAGG ATTCTCTTAA NAAACTTGTA 
    AGGTCCTGCA ATGGACATGC TCTAAGTGTT AGTGTCAATC CGTATTTATT 
    TTCCTTTTTG TCACAACCAT CTAAAGACTA TACTGTAGAG AATCAGAGGG 
    CATAGTGTAT GTATACGTCC TTTATTGTTT GTCACTTTCT TCTTTGGAAG 
    CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 379261 [Map]; Strand: w
      • AT4G00891.1 - [+] show detail
        Distance: -1353; Region: intergenic
      • AT4G00893.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein m...
        Distance: 532; Region: intergenic
    Flanking Genome Sequence: 13-2103-1 - 5-prime edge 
    CTCTTTTGTT TGCTCATTTA GTTGATGTTA TCAAATAATT GGTTCTAGGT 
    ACGTGCTTTC ATTTAAGTTC ATGACAGTGT CTTGAGCTGG AGAGAGATTA 
    TTCTATGTTC TTCTTTTGGT GACAATTTCA TTAATAGACC TCTCATCTTG 
    GACTTTAGTT TCCTCTTCTA AGCCTTTTGA TTTGTATTCT TTTTCTCTTT 
    TTTTTTGCTT TTATGGCATC ATATATGTTT ACAATTTGTA ATATTTTCTA 
    ATAACTTTTA AGTTTTATCA AATAAATTAT TTTAAAAATA TTTTTGCTTT 
    TTAAANAAAT TTTCATAAGG ACTCCACCAT TGGATAACAA AAAATTTANA 
    GACTCAACAA AAACTCTAAA CTTTAAAATT ACCAAAATAT ATTATTAAAA 
    AATATTAAGG ATTTTTTATA AGGATTCAAT CAATGGGCAT GCTCTTATCT 
    TTNGGTTTCT TCTTGTTACA TCGTTTTTGG GGGTTCCAAA TATTTACAAN 
    ACTTAATATA ATCCATTTAA ACTGCTCAAA ACCACTATCC ACCATGAGCC 
    AACTCGTGTA GCCCGCATTA TTTTAGCATC AACATTTGTA GCCTTAACTC 
    GTCTCATGGT AGGGTAATTT ATGCCCAATC CACGGGTTCT CGACCCAATC 
    GACACTCAAA AATAATAGTC CAAAGGGTTT GCATTTCTTT GTCGNCACTT 
    TTNTATATTT TTAAAAAATA TTCAGGTTTA ANAATTANTC AGGCCATTAN

AT1G28110.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 45
Computational Description
serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 3718 Blast hits to 3657 proteins in 439 species: Archae - 0; Bacteria - 354; Metazoa - 639; Fungi - 854; Plants - 1450; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28120.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00891.1

Model type
Pseudogene
Curator Summary
pseudogene of APUM24 (RNA binding)
Link
InterPro Scan - TAIR

AT4G00893.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12370.1); Has 220 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR