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13-2110-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18674887 [Map]; Strand: c
      • AT5G46040.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -1336; Region: intergenic
      • AT5G46050.1 - [+] show detail - peptide transporter 3
        Distance: 148; Region: intergenic
    Flanking Genome Sequence: 13-2110-1 - 5-prime edge 
    CATCCGAAGC TGAGAATTGT TGGTAATTAA CTCACAGTAA TGTCTAGATA 
    ATTAATATAG ATGAGCTTGC AGATAATTCG ACATGGCAGC AACCAAACTT 
    GTTTTGCAAC ACGTTGATCC ACCATAAACC GATCCAATTG GACCCATACT 
    AGAGATAACC TTTCTTCCAC GCTTGCCCCA AATCCTTGCA ACACGTTGAT 
    CCACCACAAA CCGATCCAAG TCAAACCCGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18675003 [Map]; Strand: c
      • AT5G46040.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -1452; Region: intergenic
      • AT5G46050.1 - [+] show detail - peptide transporter 3
        Distance: 32; Region: intergenic
    Flanking Genome Sequence: 13-2110-1 - 3-prime edge 
    TTCGGATGTT CTGCTAACAA TTCCATCCTA GTTGTGGAAG ATATAAATTA 
    CTTAACAAAG TCCATGAATA AAAGTTACTG ATATAGAGAA ATCTATATTA 
    TTCATTATTT GTTATTCAGT CTCTTTCATT TCCACCTCTT TCACATCAAC 
    CGAATCAGTA ACCTCAGCTC TATAAACATA AAACTTAACC ACGACCAAGA 
    ACAAAACGAA GTTAACCAGA TTAAGTACCG CAAAGAACAG GTAATAGTAA 
    TCCAACCTAG ACTCATTAAG GTTGTTCAAA ATCCATCCTC TTCCTCGTTT 
    CTTTGTTATC TCAGATACCG TAGATAACAA GAAACTGCTC ATGAAATTCC 
    CAATCGCTAA ACTCGTTGTC GAATATGATG TCCCGAGGCT TTTCATGCTC 
    TCGGGAGCTT GATCGTAGAA AAACTCAAGC T

AT5G46040.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46050.1

Model type
Protein coding
Short Description
peptide transporter 3
Curator Summary
Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.
Computational Description
peptide transporter 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G46040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR