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13-2123-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9307545 [Map]; Strand: c
      • AT1G26860.1 - [+] show detail - transposable element gene
        Distance: -1745; Region: intergenic
      • AT1G26870.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -5311; Region: intergenic
    Flanking Genome Sequence: 13-2123-1 - 5-prime edge 
    TTTCTAAACG ACAACTTCAT AGTTAACACT TGGCCGACAA AATAAATATG 
    TTACTATTAT TGTACTTTTT TTTTCTTTTA ATTTTCTCTT TGCTAATAAT 
    TNGTAAATAT AGGTCGGCTA TCTAATTATG GAAATTTGTT TTCGCTTANA 
    AATTTTTTCA AGGGTCTGAC TTTTGANAAT CTATTACAAT TTTTTTTTAA 
    AAAAACGGAG TANAGGGCTT ATATCATTAT CGCTCATAAT CATTANCCAT 
    CCATNGGTAA AAGTAAAACN CNANGGGNGN GANAAATATT TCCTANCTAA 
    TANACTATAA ANAAAANAGC TNGATAAAAG TAAAACNCNA NGGGNGNGAN 
    NAAAATTTCC TAACTAATAG GCTATAAAAA AAANANCTNG TTAAAAGTAA 
    AACNCNACGG GGGGGANNAA TNTTNCCTAN CTAATANACT NTAAAAAAAA 
    NANCTNGTTA AAAGTAAAAC NCNANGGGGG GGANNAATNT TCCCTACCCA 
    ATAGGCTTTT AAAAAAAAGA GCTANNCNCA NACANANCCG GNNCNTATNT 
    GGAAAACCTG GGCAAATTTN AAGGGAGTTT GGGGAAAACC CAAAAGGTTT 
    NTAAGNTTNT GAANANANGN CGAGGATNAT TNACCTTNCN GGANTTTNTT 
    TNTTGGCCAA NCNCCNTTTT TNTTTTATAA AGGGGAAAAN G

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9307679 [Map]; Strand: c
      • AT1G26860.1 - [+] show detail - transposable element gene
        Distance: -1879; Region: intergenic
      • AT1G26870.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -5177; Region: intergenic
    Flanking Genome Sequence: 13-2123-1 - 3-prime edge 
    TTTAGAAAGC ACTAAAGCAG CTTTGAGAAA TTACCAAAAA TAAAAACAAT 
    GTCAAGTCGA CAATAATATT TATTGATTGG CCCATATTGC TGATTAACCA 
    AGTCAAGGCC CAATACAGGT CTTGAGAAGT CACACACACC TTCTAGGTCC 
    AAGATATTAA ACACGTACGA TATGACATTA TCATGGAAAA AAATTACGCA 
    TCCACATTGG TTTTCTTAGT AAGGGATGTC TAAAACAATG GATATATGAA 
    ATATTATAAT TGAACTCTTT TTTTAACTCA ATATCTTAAG ACTTTAATCT 
    AATTTTAGCA CTCATTTGTT CAATAATGTT CAAGCT

AT1G26860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
Link
InterPro Scan - TAIR

AT1G26870.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description
FEZ (FEZ); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 2973 Blast hits to 2966 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR