Home
Mutant Lines
13-2126-1

13-2126-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 1975062 [Map]; Strand: w
- AT4G04120.1 - [+] show detail - transposable element gene
  Distance: -482; Region: promoter

CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCA CCCACACTTG TTCTGGTCTT CTCTACTTCT 
CTCTCTTCTC TCTTACTATT GTAAAGGCTA AAAGCCTAAA CAATTTAGCA 
ATGGATTTGA GAGTAAAATG CTTTTTATCG TTAGTGGTAT TTAATGGAAA 
TTTGAATAGG CACCCAAAGT CTTTTAAAAG GTGTTGAAAT CAGACGATCG 
AGTTCAATGC TTATGTAAAC CTAAAGAGAT AATTACTCTC TTTGAGATGA 
AACATGATAA TTAGTCCTTT TTTTCCCACT TTGCTAATAC TTATGTTTTG 
TTTAATATAA TTATCAATAG AAGAGAGATA ATAATTTAAG AATTTTCGTA 
TATTGATTTA TGTCTCATTT TATTTCCAAA AACGTCTTGG AAAACGAAAG 
TAAAAGTAAA GAGTAATTTT GACCGTCTAG GCTCTCTCTA TATATGTATA 
AGCTACATTC GTTTTCTACA TTAGAACCAA CTAACCAAGT TATACGATAT 
AGCTATGGGG ACACAAACAA ACAAATATAT TTTCATTGAT AGATTACTGA 
AGGTTATAAA AGAACAACCA GCCGATGTAC GGNTAGAGGC ATGGGACAGT 
GATAAGGGAT GCANCTNTCA TGCANCCGAC AAATATGANA TTCCATATTT 
ACGCGACCTA TGCANAAACG AGCCTTTAAC ATNTNTTAAC TCTTNNAATG 
GTTTTAAAGN ACCTNG

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 1046389 [Map]; Strand: w
  - AT4G02380.1 - [+] show detail - senescence-associated gene 21
    Distance: 0; Region: exon2 (3UTR)
  - AT4G02380.2 - [+] show detail - senescence-associated gene 21
    Distance: 0; Region: exon2 (3UTR)
Flanking Genome Sequence: 13-2126-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTATGTAATT 
TTGTCAAGGT CTTTAAGAGG AGATTAGTGG GTAATGATCT GGTGCAGTGA 
ACCCTATTTT CATATGTTAA GTGCGGTTCT GTAATGAATA AAATAGAGAA 
GCGTTTGGTT TCCTCTAATT GTAACAAAAG GATCGTTGGA TGTATGATAG 
AGTTTTTCTT ATAAAACCAT TTCAGAACTT CTTAACTGAT TACAGAATT
```

AT4G02380.1

Model type: Protein coding
Short Description: senescence-associated gene 21
Curator Summary: Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.
Computational Description: senescence-associated gene 21 (SAG21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 181 Blast hits to 176 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02380.2

Model type: Protein coding
Short Description: senescence-associated gene 21
Curator Summary: Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.
Computational Description: senescence-associated gene 21 (SAG21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 166 Blast hits to 166 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G04120.1

Model type: Transposable element gene
Short Description: transposable element gene
Computational Description: copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link: InterPro Scan - TAIR