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13-2136-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1799553 [Map]; Strand: w
      • AT2G05070.1 - [+] show detail - photosystem II light harvesting complex gene 2.2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-2136-1 - 5-prime edge 
    GCCACAGGAT CAGCCAAATG ATCAAACAAG TTCTCAATGG GGCCTTTACC 
    AGTAACAATG GCTTGGACAA AGAATCCAAA CATAGAGAAC ATGGCAAGAC 
    GACCGTTCTT GAGCTCCTTC ACCTTCAGCT CAGAGAAAGC CTCTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 214395 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2136-1 - 3-prime edge 
    CAGACACGGA GGATGGCGAA TCAGAGTACA GAGACGAATC AACCGTCGAA 
    TATGCAGACT TACGGTGTAC CGATTTACGC CGCCGACTGG ATTCCGGAGG 
    TAGATGTCAG ATCCAAAATC ATAATGGATC

AT2G01470.1

Model type
Protein coding
Short Description
SEC12P-like 2 protein
Curator Summary
Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.
Computational Description
SEC12P-like 2 protein (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6374 Blast hits to 3814 proteins in 364 species: Archae - 22; Bacteria - 2789; Metazoa - 1016; Fungi - 1422; Plants - 400; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05070.1

Model type
Protein coding
Short Description
photosystem II light harvesting complex gene 2.2
Curator Summary
Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
Computational Description
photosystem II light harvesting complex gene 2.2 (LHCB2.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2376 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2060; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
Link
InterPro Scan - TAIR