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13-2233-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1012911 [Map]; Strand: w
      • AT1G03950.1 - [+] show detail - vacuolar protein sorting-associated protein 2.3
        Distance: 0; Region: exon2 (CDS)
      • AT1G03960.1 - [+] show detail - Calcium-binding EF hand family protein
        Distance: -804; Region: promoter
      • AT1G03960.2 - [+] show detail - Calcium-binding EF hand family protein
        Distance: -804; Region: promoter
    Flanking Genome Sequence: 13-2233-1 - 3-prime edge 
    AATCGGACTG TCAGAATCTG AATGTTTCGT TTTTTTTTGG CAATTGCANA 
    AGTGCTTCGG GAGAGTAAGA GAGAGATGAC ACAAGCTACC AGAGGTATTC 
    TTTGTTCATA TGCTTGGATT ATTGAATCTA NAAAAAGGTT AATTCATTGT 
    TTTTGATTGC TTGATTGATA AGCTACTATG TTCCATGGCT TTGCTCAAGT 
    TTTGATTGCC ATATTCCTAA ATTCCTCTCA AACTGATGAA ACTTTCCACC 
    TTTTCGTGTT TTGTTTCGCA ACGCGGCTTC AGGAATCGAA AAGGAAATCG 
    GATCTCTGCA ATCANAAGTA TGAGTGTGGC TCAGTTAGTA ACGTTTTCAT 
    CCATCTTTTT AAAAGGGACA TATCTAAAAA ACGTTTTCTT TCATGTTTGA 
    TAGGAAAAAA AGCTCGTTCT CGANATCAAA ANAACTGCTA AATCAGGCAA 
    TGAGGTATTT CAAGCATTCC TTATCAGTAA TAGCATCTAG TTTATGTACA 
    CTACGTCTTT TGTTTTTATG CAGGGAGCGA CTAANATTCT TGCTCGGCAA 
    TTGATCCGTC TAAGGCAGCA AATAGCTAAC TTACAAGGTA GCCGAGCTCA 
    AATGCGAGGC ATTGCTACTC ATACACAGGT TCTTAATTTA AACAACTTCT 
    ATCCTTTCAT TCTAAAGNAT TTCTGNTTAT AAACCAAAAA AATTGAGTNT 
    TGGAAGCTAC CANCCCGGGC CGNNACCCCN NGNCCCNAA

AT1G03950.1

Model type
Protein coding
Short Description
vacuolar protein sorting-associated protein 2.3
Computational Description
vacuolar protein sorting-associated protein 2.3 (VPS2.3); CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1); Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2; Bacteria - 12; Metazoa - 754; Fungi - 334; Plants - 366; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03960.1

Model type
Protein coding
Short Description
Calcium-binding EF hand family protein
Computational Description
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1); Has 707 Blast hits to 703 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 370; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03960.2

Model type
Protein coding
Short Description
Calcium-binding EF hand family protein
Computational Description
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR