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13-2347-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4952356 [Map]; Strand: c
      • AT3G14740.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G14740.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2347-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCAA ACTTTGGTAT TACCAAACTT TGGGAAAGGG 
    TAAGATTTGT ATCCAACTTT CTTCTGATCT GTGTAGTTGT GGATGTTTTG 
    TATAGGGCTC AATTTTTGAT GGTAACTTTT TTTTGTCAGC AACAGGAAAG 
    TGGAAAGTAC AAGATTGTTG CCAGAGAANA ANATAAAAAG TAGGAGAAAG 
    CTCAAGGGCC ATGACCTGAA NACCATGCTT TTTTTGCTTG CAACTCTGAA 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4970597 [Map]; Strand: w
      • AT3G14800.2 - [+] show detail - transposable element gene
        Distance: -323; Region: promoter
    Flanking Genome Sequence: 13-2347-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    TAAGTGACCC TTAAATATGT ATTTGACAAT GTAGTTAACT AGTTATCATT 
    TACCATTAAC AGGATTCATA TTTATAAATT AAACATTATC TTAACATCTT 
    AATTTTGAAT ACTATAAGTC TATAATTAAC AAAAAGAAAG AATATTGGAT 
    TAATTGAGAT CGGATCACTA ATCAGATCTA TCCAACCGCG CCAAAAACCG 
    CGTTTACAAC GAAACCGGGA TAAATTCGGA TC

AT3G14740.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 3447 Blast hits to 3310 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1911; Fungi - 561; Plants - 635; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14740.2

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14800.2

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 2.1e-83 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)
Link
InterPro Scan - TAIR