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13-2449-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1035978 [Map]; Strand: w
      • AT1G04010.1 - [+] show detail - phospholipid sterol acyl transferase 1
        Distance: 0; Region: exon1 (CDS)
      • AT1G04020.1 - [+] show detail - breast cancer associated RING 1
        Distance: -559; Region: promoter
      • AT1G04020.2 - [+] show detail - breast cancer associated RING 1
        Distance: -559; Region: promoter
    Flanking Genome Sequence: 13-2449-1 - 3-prime edge 
    ATTTCACGGC GACTACTCGA AGCTATCGGG TATAATCATT CCGGGATTTG 
    CGTCGACGCA GCTACGAGCG TGGTCGATCC TTGACTGTCC ATACACTCCG 
    TTGGACTTCA ATCCGCTCGA CCTCGTATGG CTAGACACCA CTAAGGTCCG 
    TGATCTTCAT TTCCTTCGCT CCTTATTCTG TCGGTCGAGT CACTTGTTGA 
    TGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1036100 [Map]; Strand: w
      • AT1G04010.1 - [+] show detail - phospholipid sterol acyl transferase 1
        Distance: 0; Region: exon1 (CDS)
      • AT1G04020.1 - [+] show detail - breast cancer associated RING 1
        Distance: -437; Region: promoter
      • AT1G04020.2 - [+] show detail - breast cancer associated RING 1
        Distance: -437; Region: promoter
    Flanking Genome Sequence: 13-2449-1 - 5-prime edge 
    ACTCGGTCTC ATCCTCCACC GCAGTTCGGC CACCGCAAAT CAAGAAAAAA 
    ACGGCGATGA CGGTGAAGGA AGCCGTTACT GATTTCGAAT T

AT1G04010.1

Model type
Protein coding
Short Description
phospholipid sterol acyl transferase 1
Computational Description
phospholipid sterol acyl transferase 1 (PSAT1); CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: phospholipid:diacylglycerol acyltransferase (TAIR:AT5G13640.1); Has 615 Blast hits to 606 proteins in 192 species: Archae - 0; Bacteria - 2; Metazoa - 241; Fungi - 118; Plants - 150; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04020.1

Model type
Protein coding
Short Description
breast cancer associated RING 1
Curator Summary
Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein
Computational Description
breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 5889 Blast hits to 5527 proteins in 313 species: Archae - 0; Bacteria - 10; Metazoa - 4435; Fungi - 374; Plants - 570; Viruses - 11; Other Eukaryotes - 489 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04020.2

Model type
Protein coding
Short Description
breast cancer associated RING 1
Curator Summary
Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein
Computational Description
breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink).
Link
InterPro Scan - TAIR