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13-2455-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3768651 [Map]; Strand: w
      • AT1G11240.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 24...
        Distance: -357; Region: promoter
      • AT1G11250.1 - [+] show detail - syntaxin of plants 125
        Distance: -73; Region: promoter
    Flanking Genome Sequence: 13-2455-1 - 5-prime edge 
    CAGAGGACGA CGATGGTGAT GTTCATCATC ATAATCAATT GCTTTTGAAC 
    AAAAACAAAA TCAAAGAAAA AAACACATAA AACCCCAAAA AAAAAACTTT 
    NTGTNCNTAA TTAANCCAGA GAAAGAAAAT AAAANCAGAG TAAAAATGAN 
    CGATTTATTC TNTAATTCAT TCAAAAAAAA CCAGGCTCAN CTGGGGGATG 
    TTGAGGCAGG TCAANAAACN ATNAACCTCG ATAAATTNTT CNAGGATGTC 
    GANAATGNGA AGGACNACNT GAAAGGAGTC NNGGCTNTTT NTAAAAAGCT

AT1G11240.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11250.1

Model type
Protein coding
Short Description
syntaxin of plants 125
Curator Summary
member of SYP12 Gene Family
Computational Description
syntaxin of plants 125 (SYP125); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2564 Blast hits to 2556 proteins in 299 species: Archae - 11; Bacteria - 67; Metazoa - 1171; Fungi - 457; Plants - 455; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).
Link
InterPro Scan - TAIR