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13-2458-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4305505 [Map]; Strand: w
      • AT1G12640.1 - [+] show detail - MBOAT (membrane bound O-acyl transferase) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G12650.2 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF9...
        Distance: -428; Region: promoter
      • AT1G12650.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -469; Region: promoter
      • AT1G12650.4 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -469; Region: promoter
      • AT1G12650.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF9...
        Distance: -554; Region: promoter
    Flanking Genome Sequence: 13-2458-1 - 5-prime edge 
    GCCATGGAAG CATATCCGAT CGTCATCGGA ACAAGGAAGT GAAGGTTGGA 
    GGAGAAGCCA AAGGAGAGGT AAGAGAGGAA AGCACCTGAA GCAGCCGGCA 
    TACAAGTGTT TACCGAGTCT ACTCGGGACG ATTCGACAAG CGAATGAAAC 
    AGGGATCGTG GCAACGAAAC AGAGGAGGAA TCGGAGTACG GCTACCGAAA 
    CTCCGATTGA ACCAGCCATT GAACTCATAT CCATGGTGTC GAAAACCCGG 
    TTTTTTTTAA CTCGGAATGA GTCACAACGA CCGAGTTGCT CCGGGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4305389 [Map]; Strand: w
      • AT1G12640.1 - [+] show detail - MBOAT (membrane bound O-acyl transferase) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G12650.2 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF9...
        Distance: -544; Region: promoter
      • AT1G12650.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -585; Region: promoter
      • AT1G12650.4 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -585; Region: promoter
      • AT1G12650.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF9...
        Distance: -670; Region: promoter
    Flanking Genome Sequence: 13-2458-1 - 3-prime edge 
    TCCATGGCGA TTTATAGACC CAAGTGTGGA ATCATCACTT TCTTCCTCGG 
    TTTCGCTTAT CTTATTGGCT GGTACTAAAT TCTGAACCCT TTATGCTATG 
    AATTAGTGCA GAATCGTCTT CCTTCTGATT GACCCTGATT TAGTTATGGT 
    GCAAATTCGT GATTTGTATG TGTAGTCATG TGTTTTATAT GAGTGGTGAT 
    GCGTGGAAAG AAGGAGGAAT CGATTCTACT GGTAACTCTT AATTTCCTCA 
    TCTGAAAGTT GCTTCCTTTT GATTTGGATG CTCTTTGTTG TTCATGTGTA 
    GTAATTGTGA TTAGCTTCTT AACTTGCCCT TCTTGTTGTT CATGTGTTAG 
    GAGCGTTAAT GGTGTTGACG CTGAAAGTTA TCTCATGTTC AATGAATTAC 
    AATGATGGGA TGTTGAAGGA GGAAGGTCTA CGTGAAGCTC AGAAGAAAAA 
    CAGATTGATT CAGATGCCGT CTTTGATTGA GTACTTTGGT TACTGCCTTT 
    GTTGTGGTAG CCATTTTGCT GGTCCTGTTT ATGAAATGAA AGATTATCTC 
    GAATGGACAG AAGGGAAAGG GGTAAGCT

AT1G12640.1

Model type
Protein coding
Short Description
MBOAT (membrane bound O-acyl transferase) family protein
Computational Description
MBOAT (membrane bound O-acyl transferase) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT1G63050.1); Has 1204 Blast hits to 1199 proteins in 313 species: Archae - 0; Bacteria - 269; Metazoa - 625; Fungi - 142; Plants - 47; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12650.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12650.2

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12650.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12650.4

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR