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13-2476-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17580594 [Map]; Strand: w
      • AT4G37390.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-2476-1 - 5-prime edge 
    TCCTTACAAC GTCTACACTA GTCCTAACGA AGCCATCCTC TGCTCCGACT 
    CGTCCCAAAG CATGTATGCT CAAATGCTAT GTGGTCTCTT AATGCGCCAT 
    GAAGTTCTCC GACTCGGCGC AGTGTTTGCT TCCGGTCTCC TCCGTGCCAT 
    AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17580478 [Map]; Strand: w
      • AT4G37390.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-2476-1 - 3-prime edge 
    TGTAAGGATC GTACGGTCGT CTCTTGAAGT GGTCGCTTTT GTAGTAACTC 
    GTGAGAACCG GACGAGCCGG TAACCCACCT GACGTCTTTG ACTCCGACTT 
    CACAAATAAA AAGTATAAGC CTTTGCCTTT GTCTAATCCC GGCACNGTAG 
    CTGTTGTTAA ACATTTTTTG GTTAATATTA ATAAATCGTT ACAAAAATAG 
    ATTTAATTAA ATACTTAAAG TATATATACT AACAGATTCA TCACAGGCAT 
    GAGAAGACTG TATAAAAGCT GACGTCGGTC TAAGTCTTCT TCAATTGTCG 
    GCATTAGTTT CCTCTCACCA GCAGATGTTC CTGAGCTGCA GATACATACA 
    ATTAAAAAAA AAAATTACGG NCAACAGCAA TATTCTATAA GTATTTTTCT 
    AATTTTAATA TTANGANCAA AATCNCGTAA TTGATTTGTT TNTAACANCG 
    ATNTTAATCA TTGATAAAGT NGACTTAATT NTTATACCTT GGGAAAAACN 
    CGGGGATGGG GNGAAAAAAC AAAATCGGAN AACGATCNCC GTTGGATATA 
    CGTTGAATNT CCGGCTTCAA ATNTTCGTAC GTAACCNCCG GAACTTTGCT 
    NTTGAACGTT TTCCNATCAN CGACNCCCTC AANATCGAAC CGTTTCANAT 
    TTTCGGGGGT AAAGTTACAA GTCAANATTT TTCCNANAAC CTTTNTTGAA 
    CNGNTCANGG GTCCCNAGTC TTTTNTTCAA NGAC

AT4G37390.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.
Computational Description
BRU6; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G59500.1); Has 1707 Blast hits to 1543 proteins in 239 species: Archae - 1; Bacteria - 597; Metazoa - 55; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
Link
InterPro Scan - TAIR