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13-2518-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27433583 [Map]; Strand: c
      • AT1G72900.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 13-2518-1 - 3-prime edge 
    ATAGCAATGA ATTTGGCCAC GGAATGTNTT CGCGTCTCAC CAGTACGANG 
    ANCTGGTTAT GAGAAAGTGT TGGAATCACG TTTAATAAGT TAGATCCCTT 
    GAGTCAAAGT TAACTAAACT TAATAAGTTG TGTGGCTTTC AAATAAGATT 
    GTTTTGTCTA TTTTTGGAGT GGGTTCTCTT GGGGTGTATA AAAATGTCAC 
    TCTTCATTGG ATTAAATAAT ATACATTTTT TTTTGTTATA AATCAAATTT 
    GTGTATTTTA GTTATAACCT AAATGTTGTA TGTCTCTTTC TANACTTAAN 
    AACTAAAGTC TATGATTCCT TAAAAACAAA GTTTGTATAA TTTTTTTGGG 
    ATTCCCATGA CCATTTGTTC TTTGAATACC TGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27433467 [Map]; Strand: c
      • AT1G72900.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-2518-1 - 5-prime edge 
    ATTGCTTTAT ATATACAAAG CCCACTCGAA CGCAGCAGAA ATGTCGTCTC 
    TCTTTTTAAA GGCCAATGAT CGGAAGCTAC GACAAAATTT CTGGAATGTC 
    AAAAACTCAG CTTCGTAGAC AAGCNTGTAT ACCATAAGAA ATCAACAACT 
    GCTTATCTTT TGTAGTGATG ATAACAACAC TCCCCGGACC AAAACCGTTG 
    AAATCCCCTG CAAGAGCATC TAACTGTTCA AGCT

AT1G72900.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain-containing protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72940.1); Has 4486 Blast hits to 4351 proteins in 152 species: Archae - 0; Bacteria - 27; Metazoa - 4; Fungi - 0; Plants - 4454; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR