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13-2658-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26424862 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -874; Region: promoter
    Flanking Genome Sequence: 13-2658-1 - 5-prime edge 
    CNTNCTNTGG NACAAAGACT CTGCTCACCA CCTTTTTGGT GATTNNTCCA 
    TGGCCGGCGN CCAGGCCAAC AACCTCCTCG AGGATNAGAG CCAGGTCGAA 
    TCCGGTCCTT TGACCACCCT CTCTTCTTCT GGTCCCTATG GAACCTTTGT 
    TGGCGTCTAT GACGGCCACG GAGGCCCTGA GACCTCCCGT TTTGTCAACG 
    ATCATCTCTT TCACCATCTC AAGAGTAACT ACTTGTTGTT ACTACTCACC 
    ACTGAATTTT ATTTAGCTAG GGAACCATTG GAACTGAACA TTCATGTCTG 
    CAGGATTCGC AGCGGAGCAG GATTCCATGT CTGTGGATGT GATAAGAAAG 
    GCCTATGAGG CAACCGAAGA AGGGTTTCTA GGGGTGGTGG CCAAGCAGTG 
    GGCAGTGAAG CCACATATAG CAGCGGTTGG CTCTTGTTGC CTGATCGGTG 
    TGGTCTGCGA TGGGAAGCTC CAGCCCNGGC CGNNAANANN CNNNCNNTNT 
    NNNAGCNNTN AANNNNCNNN NNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26439293 [Map]; Strand: w
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -529; Region: promoter
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron24 (CDS)
    Flanking Genome Sequence: 13-2658-1 - 3-prime edge 
    TTTAAAACGG TNGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAG 
    ATACTCTAAC ATACTAGCTA GCTAGGTGGT GAATGAATCC ATACTATTTT 
    TGCAGATCAA AGAAGTGACG GAAATGAGTT TGTCAGCAAA TCAAGAGAAA 
    GTAAAGATGA AGGAGAAGAT GAAGTGGAAA GTGGAGGGTG AAGCNGGAAC 
    AACCTTCTTC CCCGCTAAGA GGCGGACCCG TTGACAAGTC GACTTTAGTA 
    GTAGAGCTTG GTCCCATGGA GATTCGTACA TTTGTGGTTC AGTTTTATCA 
    GAAACAACGT AGAAGAAGAA AGTTGTTTGT GGGATGATTG CGCCAATATG 
    TTTGTACAAT GTTTTAAATC ATTCATTCAT CAACGGTTTG GTTAGTTAGA 
    AAGCGCGGGA GGAAGGTTCA TGTATTTTTC AATCGACCAT TATACTGTGT 
    TAATGGGCCT GTTATGGAAG TTTTGGGTAT ATAAGGCCCA TTTAAAGGAA 
    ATGATGAGTG CGCGATTTGT CTCTCTTCTC AAAAACTTGA AGATCTGAGT 
    AGAGTACTTC CTTCTTCTTT TTTTTTTTTT TTTTTNNNNN NNNNGGNNNN 
    NNNNNAAAAN NGGGNNNNNN NTTTTTNTNN TNCCCCNNAA AANAAAANNA 
    AANNAAAAGN GGGNNANNNN GGGGGT

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR