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13-2825-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309089 [Map]; Strand: w
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-2825-1 - 5-prime edge 
    GNNGAGNCNG AGCANCANGA CCNTCAACCT CTCANNCCGN GCGNGGCANN 
    ATNANNGCNN NNTGNAGNAC CAAGGATACC AATNAATNTC TGACCGTTAT 
    GCGAGTCTTG TTGGACTCGC TTGTGTTGTG CCTATCTATT TATGGCATCG 
    TCACATCACC CGCCACGGTT ATGGGCCCAA CAATTAGCCC GGATGATATC 
    TCTGTAGCCC ATTAAGTCTA TTAAGAAAAA ATAAAATAAA AAACTATTTA 
    TACAGATCGC CCACCGTGGG GCTCGAACCC ACGACCACAA GGTTAAGAGC 
    CTTGCGCTCT ACCAACTGAG CTAGACGGGC TTTGTTGGTT AAGTATTGCA 
    TATAATTTAT ATAATCAGTA CTCTATTCAA TTGTCTAGTA GAAAACCAGA 
    AAAGCATTAT CCAAAAATGT GCAAGTATGG ACCTTAATTG GTGTCTCGCT 
    GAGGCCTGCG GGTAAAATAG TGAAACACAC GATAAACCAT TTCTAGACTG 
    TAGTTATCCT TTTTTAAAAG GGTATTGAAT TAAATGAGAA GATACGATGA 
    ATATCTCCGA ATTTCATAGG AGTGAGGACA TCAAAGAAAA AAAAAAAAAN 
    GAGTNTGNGN GGNNTAANGT NTNNNNTTGG GNTTNAANAC CCGNNCNNNN 
    NGGGGGTNTT NNNTGAGGNN GGAAANCCCG GTNTTTTTNT NTTNGGAAAN 
    TTAAAAAAAA NNTNNGNTAN NGGNAAAAAA AAAANNT

AT1G01880.1

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01880.2

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2).
Link
InterPro Scan - TAIR