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13-2827-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 158397 [Map]; Strand: w
      • AT3G01410.2 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -2758; Region: intergenic
      • AT3G01420.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 1069; Region: intergenic
    Flanking Genome Sequence: 13-2827-1 - 5-prime edge 
    ACTCTACTCA TATCGGGTTG GGAATCATGC ATGATATAGT GGTCATCCAA 
    AGGATCAAAC ACTAGATGAT AAAGAAGGAT ATAGGGAAGC ATAAAAGGGT 
    TCCAATAAAG TCGTGCTATG TTCTTCCTAT CCCACCTAAG ATAGCAAACA 
    GGCCTCCTAA GTATATATGG TGGATAGAGT ATGTGTTGAA ACTGTAAAAT 
    CTTCTACCGG ACAAGAAAGT TGCATGATTG AATT

AT3G01410.2

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 3179 Blast hits to 3179 proteins in 588 species: Archae - 77; Bacteria - 1109; Metazoa - 13; Fungi - 0; Plants - 1505; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01420.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.
Computational Description
DOX1; FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: alpha dioxygenase (TAIR:AT1G73680.1); Has 1465 Blast hits to 1381 proteins in 214 species: Archae - 0; Bacteria - 94; Metazoa - 1085; Fungi - 168; Plants - 70; Viruses - 1; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR