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13-2933-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25055748 [Map]; Strand: w
      • AT5G62400.1 - [+] show detail - unknown protein; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bac...
        Distance: -142; Region: promoter
      • AT5G62410.1 - [+] show detail - structural maintenance of chromosomes 2
        Distance: -514; Region: promoter
    Flanking Genome Sequence: 13-2933-1 - 5-prime edge 
    GATCGGATGG CGACGGTTAA TGTGAAGCTA CACGTATCAT AAATATAACT 
    GTCCAAGGCC AAGGTTACGT GGCCTATAGA AATTAGATCC TATAGTTTTG 
    CTCCCTCGAC GATATCGATA TCCGTTGTGT GGATCTGCGC CATGCATGTC 
    GAACATGATA TATGTGCATT AACAAACATA GCACCATTCA TTAGTCATAT 
    TCAAACAAGG AATGAACCAT TAATTTGTGG GTGTGAAGCA GAGTGGGATA 
    TCGTTGTTAA CATATGAAGT ATACATGTAT AAAATTGTAC AGAATGTATT 
    TGATACCATC AAACCTTCTG AATGGTGTGG AAGGTTTCAG AACTGTTCCC 
    AAAGTTCACT TTCCCGCTCC TTGTGTTCCC AAATCGAAAT GCCCTTGTTT 
    TCAAAATCCC AAATCGACTC CTAATTATCT TCAACTAAAA AACCAAAATT 
    GACTTCAGAT TCGCCTTCTT CTTCTCTTGC AACGTCTCAA TTTCATGTGC 
    CTTCGACCTT AGATTCCAAT TTTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25055632 [Map]; Strand: w
      • AT5G62400.1 - [+] show detail - unknown protein; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bac...
        Distance: -26; Region: promoter
      • AT5G62410.1 - [+] show detail - structural maintenance of chromosomes 2
        Distance: -630; Region: promoter
    Flanking Genome Sequence: 13-2933-1 - 3-prime edge 
    ATCCGATCGA CTACGAGAAG TTATTTTTAA GAGTTTAAAA CCTTTCGAAA 
    ATGGGAGAAA TAATTGTTTA AGAAAAGGAT GAAGACGACG AAGGCGAAAG 
    CAAACACAAT CTTGGGGAAG AAACTCGAAG AACTTGAGTA TTACCTACAA 
    GAATT

AT5G62400.1

Model type
Protein coding
Computational Description
unknown protein; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62410.1

Model type
Protein coding
Short Description
structural maintenance of chromosomes 2
Curator Summary
SMC2-1 (SMC2)
Computational Description
structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink).
Link
InterPro Scan - TAIR