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13-2964-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4611436 [Map]; Strand: c
      • AT1G13440.1 - [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C2
        Distance: -789; Region: promoter
      • AT1G13440.2 - [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C2
        Distance: -789; Region: promoter
      • AT1G13448.1 - [+] show detail - other RNA
        Distance: -807; Region: promoter
    Flanking Genome Sequence: 13-2964-1 - 5-prime edge 
    GGGGNAATAG CGTAGAAGCG TGNNGTNCTC TTGCCCGACG AGNCNGNCNG 
    NANNACNNNC NNNAGGNNGA NAACAACACN GGTACCATCT ATNGGCNNTT 
    NGGNATACAG GCACCGANGA GGANAAATGT ACANCACCCT ATGTACTNGG 
    GTCAAATTAT NAATATTTGA AACAGTAAGC AACCAGTAAT TCTGATAAAN 
    ACGTNTACAA GCATNTACAC ATNTAAATNG ATNAAAACAA AACACCTTTA 
    AATATAGGGN TNATGAAGTC AAANNTTCAC CTNGATTATT CTAAAANAAN 
    GGNTGGAGTA ATGTTGCTGA ANGTNGAGGG AGAATTGACA TTTGAAAGTA 
    ACTTTNACTA TAGTGAACNG GATGATAAAG GNNGATCCGA NAATAATNGA 
    ATATACCANG AANGGGNNNA CAAGANANAT GGATAAAAAA CAGAGGGGTT 
    NCCTNGNTAC NCCAAAAAAN AAAAAAAGGN GNNNNNTNCN GGNNGGGNAC 
    NTTNGGANTT ANNCNGGGNN ANATANCGGG NTGTNNNCCN GNNNTANTAN 
    NAAANTNTTT GNNNCGTCGN GATCAANAGG AANCNANGAN TTNGGGTNTT 
    TGNGNAAAAC CTNANAGGGN CGGCACCAAG GGAGAGTNTA ANAAACCCNG 
    CNAAGACCNA AGGNNNAGGG CGACNAACCG NGCCNACNNC NAGGGANTNA 
    AAGGAANTAA GCCCCGCGTC TTTTCGANTA ANNGGGGGGG NGANNNCNCA 
    NNNCCNTTCT N

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3810442 [Map]; Strand: w
      • AT1G11330.2 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G11330.1 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2964-1 - 3-prime edge 
    CTTTAAAACG GTAGAGGTAT TTTACNGACC GTTACCGACC GTTTTCATCC 
    TCAGAGACAA CAAGCAAGTG CATGCAAGTA GAAGAAGACC AAAACGACGA 
    CGTATGTTCA CTGAAACCAC CATAACTCTT TGAAACAGAG AATGACTCCA 
    GTTTTGCTTT GTTTTCCTAC ACCGAGAGGT AAATTAGTAG TCTTTTTCTG 
    TCTCTATGAG AAGACTTGAC TTAGAAAATG ATGTAAAAGT TTTATGTTTC 
    AACGAAGATT TGTTTTTGGT GTGAGTAATA ATGTTATTAG GTGGATTCAT 
    TGAATAGCCC ACCAATTAGC AGTGAGAGTG GAACAAACC

AT1G11330.1

Model type
Protein coding
Short Description
S-locus lectin protein kinase family protein
Computational Description
S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-domain-1 13 (TAIR:AT1G11350.1); Has 124566 Blast hits to 122714 proteins in 4439 species: Archae - 108; Bacteria - 13570; Metazoa - 45533; Fungi - 10903; Plants - 35507; Viruses - 467; Other Eukaryotes - 18478 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11330.2

Model type
Protein coding
Short Description
S-locus lectin protein kinase family protein
Computational Description
S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-domain-1 13 (TAIR:AT1G11350.1).
Link
InterPro Scan - TAIR

AT1G13440.1

Model type
Protein coding
Short Description
glyceraldehyde-3-phosphate dehydrogenase C2
Computational Description
glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87; Bacteria - 10988; Metazoa - 2357; Fungi - 2864; Plants - 3864; Viruses - 0; Other Eukaryotes - 5222 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13440.2

Model type
Protein coding
Short Description
glyceraldehyde-3-phosphate dehydrogenase C2
Computational Description
glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25183 Blast hits to 25173 proteins in 6340 species: Archae - 41; Bacteria - 10793; Metazoa - 2402; Fungi - 2843; Plants - 3866; Viruses - 0; Other Eukaryotes - 5238 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13448.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G13450
Link
InterPro Scan - TAIR