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13-2995-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24589394 [Map]; Strand: w
      • AT5G61130.1 - [+] show detail - plasmodesmata callose-binding protein 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G61140.2 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: -512; Region: promoter
      • AT5G61140.1 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: -605; Region: promoter
    Flanking Genome Sequence: 13-2995-1 - 5-prime edge 
    GNCACAAGGA NNNNAAAGAT NACCAGNCGC CGGGCCGANG ANCACTGCGN 
    GNCNTANAGA CAAAATGTCA CTGTNGTNTT TCTAGAAACA GAGAGAGAAA 
    AGAATGGAGA TAGAGAGATN

AT5G61130.1

Model type
Protein coding
Short Description
plasmodesmata callose-binding protein 1
Curator Summary
Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.
Computational Description
plasmodesmata callose-binding protein 1 (PDCB1); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: callose deposition in cell wall; LOCATED IN: plasmodesma, anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 2214 Blast hits to 2014 proteins in 207 species: Archae - 0; Bacteria - 106; Metazoa - 136; Fungi - 241; Plants - 1436; Viruses - 12; Other Eukaryotes - 283 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61140.1

Model type
Protein coding
Short Description
U5 small nuclear ribonucleoprotein helicase
Curator Summary
Encodes a predicted protein with 30% identity with MER3/RCK.
Computational Description
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61140.2

Model type
Protein coding
Short Description
U5 small nuclear ribonucleoprotein helicase
Curator Summary
Encodes a predicted protein with 30% identity with MER3/RCK.
Computational Description
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2).
Link
InterPro Scan - TAIR