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13-3024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
flower (PO:0009046)
  • present in greater numbers in organism (PATO:0000470)
    (Branching::inflorescene)
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Flowering & Growth::dwarf/small)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1698364 [Map]; Strand: c
      • AT5G05670.1 - [+] show detail - signal recognition particle binding
        Distance: -211; Region: promoter
      • AT5G05670.2 - [+] show detail - signal recognition particle binding
        Distance: -240; Region: promoter
      • AT5G05680.1 - [+] show detail - nuclear pore complex protein-related
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-3024-1 - 3-prime edge 
    TCTGTGTCTG CATCTCCTTC CGACGAAAAC AGATACACTC GAGTGAAGAA 
    AGTATGAAAT TTAACTTTAA CGAGACAGAG GATGCACCAG ATTCACGACG 
    ATCTCCGACG CCCAAAGAGC CGGTTAGGTG GGTTCCTCTC CAGAGCCACC 
    CGGTTTTCGC TTCTCTTCCT TCCTCCCAAG ATGAACCCGC CGTGTCGCAG 
    CTGTTTCCGA GAAATTTCAT GGCTTGGGAC GGAGACTCGC GCGTATACTA 
    CTGGGATTCG AGACGATATC TCCTTCACCG ATTATCTCTG CGCTTGGGTG 
    AACCTGAACC ATCCTCCGTC CTCGCCGCAG TCCCGTCCAA GGTCATTTAC 
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TNTGTGTTCN CNNCNCTGNN 
    TCNNCCAANG TGNGTNNNNA AAAAAATATA TATNGAGCNC TNTTTTNNAG 
    CGCNNANNTT TCNNTGTCTN NGANANATTG TGTATNANAA GAGTGAGAAA 
    NANTATATCT CTCANTGAGG GNNGANTATN NNAANATTTT TTNNACTCNN 
    TNTGCNCTNN TGAAAAANAC CTTTNNNTNC NCTNTGGNGT NTGCGCCACA 
    AAANANAATT TNTGGGNGAN AGATNTCTTN TGGAGAGAGA GAANANNCCN 
    CCNNCGGGGN GGNNAANCCA CNTNNNTTTA NNNNA

AT5G05670.1

Model type
Protein coding
Short Description
signal recognition particle binding
Computational Description
signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05670.2

Model type
Protein coding
Short Description
signal recognition particle binding
Computational Description
signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05680.1

Model type
Protein coding
Short Description
nuclear pore complex protein-related
Curator Summary
Encodes MOS7 (Modifier of snc1,7), homologous to human and Drosophila melanogaster nucleoporin Nup88. Resides at the nuclear envelope. Modulates the nuclear concentrations of certain defense proteins regulates defense outputs.
Computational Description
MODIFIER OF SNC1,7 (MOS7); CONTAINS InterPro DOMAIN/s: Nuclear pore complex, nucleoporin 88 (InterPro:IPR019321); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR