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13-3043-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4778339 [Map]; Strand: w
      • AT5G14780.1 - [+] show detail - formate dehydrogenase
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-3043-1 - 5-prime edge 
    CAGAAGATGA GCTCATGAGA ATCTTAATCC TCATGCGCAA CTTCGTACCA 
    GGGTACAACC AGGTCGTCAA AGGCGAGTGG AACGTCGCGG GCATTGCGTA 
    CAGAGCTTAT GATCTTGAAG GGAAGACGAT AGGAACCGTG GGAGCTGGAA 
    GAATCGGAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4778223 [Map]; Strand: w
      • AT5G14780.1 - [+] show detail - formate dehydrogenase
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-3043-1 - 3-prime edge 
    ATCTTCTGCC ACTGAGACCA CGTTGCTTCC CGTGACTTCA GCAACCGTCA 
    GGCCAGCAGC TGCAGCTGCC TGGAGATCAA TATGATCCGA GCCAATACCA 
    GCTGTGAGGA GAAGCT

AT5G14780.1

Model type
Protein coding
Short Description
formate dehydrogenase
Curator Summary
Encodes a NAD-dependent formate dehydrogenase.
Computational Description
formate dehydrogenase (FDH); FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: response to cadmium ion, response to wounding; LOCATED IN: thylakoid, mitochondrion, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT1G17745.1); Has 28984 Blast hits to 28977 proteins in 2707 species: Archae - 468; Bacteria - 17844; Metazoa - 730; Fungi - 1196; Plants - 566; Viruses - 5; Other Eukaryotes - 8175 (source: NCBI BLink).
Link
InterPro Scan - TAIR