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13-3234-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16364416 [Map]; Strand: w
      • AT2G39200.1 - [+] show detail - Seven transmembrane MLO family protein
        Distance: -4603; Region: intergenic
      • AT2G39210.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 1741; Region: intergenic
    Flanking Genome Sequence: 13-3234-1 - 5-prime edge 
    ACCAANTCCT CATCATCATT TCTTTTCTTA TACGTTTATT TATATATATG 
    AGAGATTAGG CCTCATGATA AAAATGTATT AATATATCTA TATAGATGAC 
    TATACATTTA AAAAACAATC AATTGGATAA AAAAACAGCT AAAATAAACA 
    AAATTTAATT CAAACTGCAA AACAAATTCA TTTTGAAAAT AAACTGCATC 
    TGGATGTTGA GTCCTAATTT TAATTCTGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17688150 [Map]; Strand: c
      • AT2G42480.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-3234-1 - 3-prime edge 
    NTNACCANGC CTANNGNTTT ANAAAGNATN TGNANTATGN GCGCCACTGA 
    CCANAGCAGN GCNNANGGAN AGGANCNAAN ACCACNCGAT CTCCANATCG 
    GGCANCGATA NTGANCCAAC ANANATCCAT CANCGGAAGA TTTGGCCTCT 
    CTGGNTGTCC ACCTTCANCT TTGAGATCTG ACACCATTAG CNCAAGATTC 
    TTCACTCTAT CCTCTAGAGA CCCATCAGCA TCTGCTTTCT TCTTCTTCTC 
    CGAGGAAACT TCCTCAAGCT

AT2G39200.1

Model type
Protein coding
Short Description
Seven transmembrane MLO family protein
Curator Summary
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
Computational Description
MILDEW RESISTANCE LOCUS O 12 (MLO12); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, response to cyclopentenone, leaf senescence, cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G11310.1); Has 552 Blast hits to 537 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 545; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39210.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G28120.1); Has 3072 Blast hits to 2927 proteins in 685 species: Archae - 32; Bacteria - 1223; Metazoa - 36; Fungi - 288; Plants - 601; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42480.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1); Has 20820 Blast hits to 13670 proteins in 1127 species: Archae - 516; Bacteria - 2848; Metazoa - 7681; Fungi - 1563; Plants - 1737; Viruses - 68; Other Eukaryotes - 6407 (source: NCBI BLink).
Link
InterPro Scan - TAIR