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13-3265-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12174936 [Map]; Strand: w
      • AT4G23271.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -891; Region: promoter
      • AT4G23280.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 20
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3265-1 - 5-prime edge 
    TNTCAAANAA NTTTNAAAAC GGGNAAAACT AACAAANCGG TTATACGATA 
    ACGGTCGGTA CGGGATTTTC CCATCCTACT TTCATCTCTA GGGACAAGCC 
    CCCGACATGG TCACCGGACT TTTCCTCTGC CGCGGAAACG TCTCACCTGA 
    AGTTTGCCGT AGCTGCATCG CCTTGTCTGT TAACGAATCG TTAAGTCGGT 
    GTCCAAATGA GAGAGAAGCC GTGTTCTATT ACGAGCAGTG TATGCTCAGA 
    TACTCTAACC GGAATATACT ATCCACTCTA AACACCGATG GAGGAGTGTT 
    CATGCAGAAC GCTAGGAATC CTATATCAGT CAAACAAGAT CGGTTCAGAG 
    ATTTGGTCTT GAACCCCATG AACTTAGCTG CCATTGAAGC CGCGAGGAGT 
    ATCAAAAGAT TCGCTGTGAC AAAATTTGAT TTAAATGCAT TACAGAGTTT 
    GTACGGAATG GTTCAGTGCA CTCCTGACCT TACGGAACAA GACTGCTTAG 
    ACTGCCTACA ACAAAGCATC AATCAAGTAA CCTATGACAA AATTGGGGGA 
    AGAACTTTTC TGCCGAGCTG TACGTCAAGA TACNATAATT ACGAGTTTTA 
    CAACGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12174910 [Map]; Strand: w
      • AT4G23271.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -865; Region: promoter
      • AT4G23280.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 20
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3265-1 - 3-prime edge 
    CTTGTCCCGC AGTGGCGTTT TGGAATCCGG TGGAGTAAGA GGCGTTACGA 
    GAAGAGAGAG AGGACAAAAG GGTTTTGAGA TTGGTGGAGT AAGTGCTGTT 
    ACTTGAGTAA GTTGTCGTGA TAGAACAATT ATGATATAGG TAAAAAGGAT 
    TTTGAGCAGA AGCTGTGAAG CTAGTGATGA ATGAGAAAAG GAAAAGGAAA 
    ATGAAACAGA TCAGAGAAGA CATGCTTCCT TTTCCTTGAT TTGGAGTTTT 
    AGATCATGAA TCTCTGTATG TATATTAACG CGAAATTGAG GATGGTTCAT 
    ACTCTTCTGA CGGCTATAAG TCAATCAAAG AAAGTCATGG TAAACGCCGG 
    TTTTATTTAA TTTTAGTTTG TAATGTCAAA ACAATAGCTA GTTCTTTCAA 
    ACAAAGAGAG AAGTTTAAGT TACTATTTAT AGCCTTACCA AAAAAAGAAA 
    AGAGTTAACG ATTTCTGTGT AACGATAAAT TATTTGTCAG TAATTTGCTC 
    TTTTTAAAAA AACTTTAATT CCTCGTCAAA ACTCATTGAT TTACACATTT 
    CCAAGTTTAA TTTTCTCTCT TTTTTTCTCT AAATTTGCTA ATCCTATATA 
    CATATTTTTT TCGTGGAGTT GNCATATTTA TCATTTATGA NAGCATGAAA 
    AATCANCGTG AGGAGAGTAC TTCAAAGTTC AAACATANNC TTGNCTTTAC 
    NTTNTANTTG AAGCTCCANC CCNGGCCGNC NACC

AT4G23271.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23280.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 20
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (CRK20); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, defense response, programmed cell death, response to salicylic acid stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (TAIR:AT4G23270.1); Has 119459 Blast hits to 118018 proteins in 4463 species: Archae - 96; Bacteria - 13614; Metazoa - 44023; Fungi - 10123; Plants - 33901; Viruses - 397; Other Eukaryotes - 17305 (source: NCBI BLink).
Link
InterPro Scan - TAIR