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13-3297-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 644982 [Map]; Strand: w
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 646; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 2710; Region: intergenic
    Flanking Genome Sequence: 13-3297-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTCAGAACGA 
    TGACGAACAG AGTAATTAGC AGAGACTAAC AAGAATCTTT TTAACGGTAT 
    ACAAACTATG AAACTAGAGG AATTAGACCA AGAGAATTTT ACCTGTAAGA 
    TGATGCTTTT ATCTTCTTCT CTCGGATGTT GAGATATATA GATATGTTGA 
    GTGAGAACTC AAGTGAAAGA GCAGAACTAA TAAGAGAATT AAAAAACAAC 
    ATTTGTAAGA GGATTCAGAT TTCTGTCCGA AGAAAGGAGG AGTAGTATTT 
    ATAGAGTTCA ATAATCTTAA TTTTTCTCAT TAAAACTATT AATTCAAAGT 
    TTCAAACGGT CAAAAAAATG TTACCGTTTC ACAACGTTCA TATTTTGCTA 
    TTACCAAGTC AAATCAAAAC GTTGGAACTA TAAACCGTAA ACGCACTCAA 
    GACTCTTTTA AGTGCAAAAA AATTATTTAT GTCTTTATTC TTAATAATGC 
    ATCATGCAAT ACATTGTCTT ACATTGCTTT ATCACACTTG ATGATTTATG 
    TTTTCTAAAA CTTTTCCTAG TTTCCTCTTC TTTGTACAAA TTGGTGAAAA 
    TTATTACTTG TGTCCAAAGT TACTGCATTT TTAGGGTTTT GTTATATCAT 
    ATTCATTGTA AGAGAGTTGC TGAATCACCC CAAAAGGAGT TGGATTAAAC 
    AAATAGTATA TCAAGGNCCA ATATTTATTT TTCTAAACAT ATTATCACAA 
    GTGATTTAAA CAAGAGAGTT A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 644976 [Map]; Strand: w
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 640; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 2716; Region: intergenic
    Flanking Genome Sequence: 13-3297-1 - 5-prime edge 
    NATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCCAAAC ATTTTTATGG AGTTAAAACA AACATGATAT 
    ATACTCTGTT TCTAATCCAT TTATACTCTG TTAATGAACT GATTTTTAGC 
    TATATATGTG TTAATAAGTA ATAACTTTTA ACAAAAAAAA TTGTGTTAAT 
    AAACAGAGTT TTAGTTTTAT TTGAGAGTCT TTGATTATAT ATCATGCTGT 
    CTTGATTAAC TATCATGCTG TCTTGATTAA CTTCATTGAT GTGAGAATAA 
    TCTAGTTAGA TATGTTGCTG TCTAAGAAAA CATATAAGGT TTTTTGGTTT 
    TGTCTAAATA ATCTATTGAG TTTTGGATTT TTAAGGAACG TAGTTATATT 
    TATGCATGTA CAAAGTTGTT GACAAGGCGG AAAAAATTGT AAAGACTAAT 
    GATGATTGAT TCTGATTAAT TTTTGCAGAG GATACAAAAC TCCGGACTCA 
    GTCTCTAGGC TTTGTAATCC GGAGTTTTCT AGANACTGAG TCCGGAGTTT 
    TCCATCTTCT ACTTGGCCAA CCTTTGAAGT TAACCANATT GNGTATGTAT 
    GTAATTTTTG TNTACTTTGA TGAAAGATGG ATGTATAAAG TATATAGGAT 
    GNAATGAATG TCCGTGATGT GTGTGTATGC NTAGATGTAT GTGTGAGAGA 
    GAGAGANANA TANATTGTAA ANAGTGGGTC NCAGTTTNNN CACNGNNAAA 
    TNAAGGTNGG CNCCA

AT4G01510.1

Model type
Protein coding
Short Description
Arv1-like protein
Computational Description
ARV2; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT1G01020.1); Has 318 Blast hits to 318 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 116; Plants - 41; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR