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13-3315-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3471691 [Map]; Strand: c
      • AT1G10530.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-ter...
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 13-3315-1 - 5-prime edge 
    GGAGAGCCTG ATCCGAAACT CTACTGAATA ATTTTTTGGT TCTGTTTTTT 
    TTTTNCCGGG NTTTTNCANN GGANAANCGG NGGGNGNCTA AANAAAAANG 
    NNAAAAAANA ANNCCANAAA ANCCCNAAAA AAGNCANCAA ANCAAACCTT 
    TTTNTNCCTT TTTTTCCCCT NTNNCGCCAA NGTNTNTTTT TTNNCAAAGG 
    GGNAAANCAN GGGAANTTNG AAAAAAGGGG GGTTTTNGTN NNNGNGGNAA 
    ATNNNTCNAA NGNNCCCAAA GNTCCCACCC NGGNCCGNNA NCCNCCCNNN 
    CCCTNNAGGG ANNNNNNNNN GGGGGGGGNN NAAANANGGG CCGNANAANN 
    NANNANNCNN ANNNNNCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3794375 [Map]; Strand: w
      • AT1G11290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -492; Region: promoter
      • AT1G11300.1 - [+] show detail - protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;ki...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-3315-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAC 
    CAGCTTCTCA AGAACAGTCC CAATTTGGTG TAGCTAGCTT TTGTGTTCTT 
    AATATGTCCT GAAACAACAC AAACACAACC GATCTATTAA TAGCAAAGAT 
    CTCAGCATTG AATGTAACAA TTAACAATGG TAGGGTCTTG AGTTACNGTT 
    AAGTGATTCT GTAATGTTGT GGTGATGATT AAATTCTCAA GAGAAAAGTC 
    CAAATATTGT TAGAAATGTC AAAGTCAAGT GGCACNTGTT TCCTCTAAGA 
    TGATGATGCT AGCTAAAAGA TTCATCATTT TTCTATTAAT GGCGGTCTTT 
    CTACGGTTTG ATTGACCAAA GTTGGCCCGT CTATTACGAC TTGGTCTTAA 
    TTCACCTGAG AAGAGTGACT CACTTCACCT TCTTCTCCGG AATAAGCTCA 
    CGTCACTGTC AATTCAATCA AGTCCAGACA TTGTGGATAA AGTATATACT 
    TCGAAGAAGG AATTGTCTAA AGGATTAATT TTTGCAGAAC AAAAGCATGA 
    GCTCACAATT GGTGCAGGTC TCTACCGTTC CTCAAATCCC TAATTCGCCG 
    TCTCGCCATC GTCACATTCT CTCCGAGAGA AATTACATTC CGGCTAATGT 
    CTATGAGCAT CCAGCGGCTC TTCTTCTTGA GAGATGTTCT TCTCTGAAAG 
    AACTTCGTCA AATTCTTCCT CTCGTTTTCA AAAATGGGCT TTATCAGGAG 
    CATCTTTTCC AGACGAAGCT

AT1G10530.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1); Has 143 Blast hits to 143 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11290.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.
Computational Description
CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11300.1

Model type
Protein coding
Short Description
protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding
Computational Description
protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.2); Has 247442 Blast hits to 123826 proteins in 4585 species: Archae - 216; Bacteria - 26920; Metazoa - 91063; Fungi - 20518; Plants - 70734; Viruses - 831; Other Eukaryotes - 37160 (source: NCBI BLink).
Link
InterPro Scan - TAIR