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13-3340-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3631104 [Map]; Strand: w
      • AT1G10890.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 339; Region: intergenic
      • AT1G10900.1 - [+] show detail - Phosphatidylinositol-4-phosphate 5-kinase family protein
        Distance: 1130; Region: intergenic
    Flanking Genome Sequence: 13-3340-1 - 5-prime edge 
    GNNAACNCAA CTGCNCNNAN CGNACTGCNT NATCCNAAAA ANGNGGNTNA 
    NNAGNCNAGG CCANTCGACC ACNCNGGNNN CTATNATGAT GGATTCTAGG 
    GTTTGTTCCT TGANATTTGA TCTCCGCAAG GACTTGGNGG TCGAGCCACC 
    ATCTATAAAG CAGGTAAGTA TACTTGATCA AATANAGGTA TCTAAAATCT 
    TTCACAGCNA CGGTTTATTG TTATGCATAA TCAAAAACNA CACNACNAGG 
    CTCTTGGTCT GGAATCCGTA TTTGGAGCAA ACNAGGNGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3631022 [Map]; Strand: w
      • AT1G10890.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 257; Region: intergenic
      • AT1G10900.1 - [+] show detail - Phosphatidylinositol-4-phosphate 5-kinase family protein
        Distance: 1212; Region: intergenic
    Flanking Genome Sequence: 13-3340-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACTG TTTTCATACA 
    TGTNATGAGG AGNCCNGCCG AGATATCTNA NCTANGNTAN TTNNCNTCAA 
    GATGANANAT NGTCGTCATT CTAACCAACA ACAATGCTCT AACCTAAATC 
    TCAAGAGTTT TTTTTAACTA AACTAAACAA AGCT

AT1G10890.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10900.1

Model type
Protein coding
Short Description
Phosphatidylinositol-4-phosphate 5-kinase family protein
Computational Description
Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 26222 Blast hits to 7747 proteins in 608 species: Archae - 0; Bacteria - 3917; Metazoa - 3982; Fungi - 423; Plants - 1715; Viruses - 0; Other Eukaryotes - 16185 (source: NCBI BLink).
Link
InterPro Scan - TAIR